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IMGVR_UViG_3300009518_000068-3300009518-Ga0116128_10023374
Arc-VirIMGVR_UViG_3300009518_000068-3300009518-Ga0116128_10023374
Identity
- Kingdom:
- archaea
Quality
83.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-63_276-323
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6z74C02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.68 | 49.0 | 4.13e-01 | 75.0% | 74.8% |
| 4i1mB01 | 1.20.120.1700 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.66 | 46.0 | 4.20e-01 | 72.9% | 69.0% |
| 7c1iA01 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.66 | 39.0 | 3.91e-01 | 70.8% | 56.0% |
| 1wn0A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.65 | 40.0 | 3.63e-01 | 72.9% | 45.0% |
| 4aqnA02 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.63 | 57.0 | 4.51e-01 | 100.0% | 100.0% |
| 2n3eA01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.62 | 44.0 | 4.13e-01 | 83.3% | 60.9% |
| 1sj8A02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.61 | 44.0 | 4.08e-01 | 76.0% | 75.4% |
| 1st6A03 | 1.20.120.810 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle | 0.59 | 43.0 | 3.30e-01 | 76.0% | 40.2% |
| 3k1zA02 | 1.10.150.720 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Haloacid dehalogenase-like hydrolase | 0.59 | 40.0 | 4.25e-01 | 87.5% | 79.8% |
| 2mx8A01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.58 | 42.0 | 4.05e-01 | 82.3% | 65.5% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 40.0 | 4.33e-01 | 87.5% | 87.2% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 41.0 | 4.34e-01 | 88.5% | 84.7% |
| 1fx0A03 | 1.20.150.20 | Mainly Alpha › Up-down Bundle › Lysin › ATP synthase alpha/beta chain, C-terminal domain | 0.57 | 39.0 | 3.58e-01 | 71.9% | 53.5% |
| 4akvA02 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.56 | 40.0 | 3.26e-01 | 74.0% | 89.5% |
| 2hujA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.56 | 41.0 | 3.77e-01 | 77.1% | 65.6% |
| 2v5cA03 | 1.20.58.460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like | 0.56 | 41.0 | 3.69e-01 | 77.1% | 65.4% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.55 | 40.0 | 4.02e-01 | 89.6% | 74.2% |
| 1ie9A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.55 | 48.0 | 3.62e-01 | 100.0% | 72.9% |
| 1eu8A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 41.0 | 3.23e-01 | 80.2% | 80.6% |
| 3n00A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.55 | 48.0 | 3.98e-01 | 100.0% | 72.3% |
| 2ozbE02 | 1.10.246.90 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Nop domain | 0.55 | 43.0 | 4.19e-01 | 84.4% | 80.4% |
| 3kkbA00 | 1.20.120.880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain | 0.54 | 41.0 | 3.75e-01 | 89.6% | 61.1% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.54 | 39.0 | 4.34e-01 | 91.7% | 97.3% |
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 39.0 | 3.75e-01 | 93.8% | 65.5% |
| 6ziwI02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 37.0 | 3.04e-01 | 72.9% | 38.5% |
| 7aalA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.53 | 41.0 | 2.98e-01 | 83.3% | 80.1% |
| 1wfdA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.52 | 37.0 | 3.81e-01 | 95.8% | 76.3% |
| 3v5uA02 | 1.20.1420.30 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › NCX, central ion-binding region | 0.52 | 46.0 | 3.58e-01 | 100.0% | 84.6% |
| 2hf6A00 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 44.0 | 3.84e-01 | 94.8% | 88.6% |
| 2ovjA00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.51 | 36.0 | 2.89e-01 | 91.7% | 34.8% |
| 2ykgA03 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.51 | 36.0 | 3.29e-01 | 96.9% | 53.4% |
| 2rkkA01 | 1.25.40.270 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 | 0.51 | 46.0 | 3.93e-01 | 100.0% | 94.2% |
| 3uorB02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 40.0 | 3.17e-01 | 85.4% | 77.7% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5024530 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.71 | 51.0 | 4.40e-01 | 75.0% | 73.8% |
| 4034504 | 601.4.1.47 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › MspA_staph | 0.63 | 46.0 | 4.50e-01 | 76.0% | 75.2% |
| 4029621 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.60 | 50.0 | 4.00e-01 | 96.9% | 75.3% |
| 3241943 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.60 | 52.0 | 4.08e-01 | 100.0% | 73.6% |
| 5082746 | 604.12.1.143 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF26604 | 0.59 | 42.0 | 4.75e-01 | 95.8% | 94.7% |
| 3577038 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.58 | 49.0 | 3.77e-01 | 95.8% | 73.0% |
| 3691598 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.57 | 49.0 | 3.18e-01 | 91.7% | 23.4% |
| 4002826 | 604.12.1.9 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 | 0.57 | 41.0 | 4.12e-01 | 94.8% | 73.0% |
| 4930533 | 3843.1.1.6 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF | 0.57 | 44.0 | 4.77e-01 | 84.4% | 97.5% |
| 3537942 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.56 | 46.0 | 3.71e-01 | 91.7% | 82.0% |
| 3451562 | 102.1.4.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › Nop C-terminal domain | 0.56 | 41.0 | 4.19e-01 | 77.1% | 77.9% |
| 4577904 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.56 | 40.0 | 4.35e-01 | 86.5% | 90.0% |
| 3664894 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.56 | 41.0 | 2.78e-01 | 78.1% | 21.1% |
| 4999686 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.55 | 39.0 | 4.36e-01 | 92.7% | 94.7% |
| 5045518 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.55 | 41.0 | 3.18e-01 | 83.3% | 33.2% |
| 4998520 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.54 | 37.0 | 4.13e-01 | 90.6% | 90.7% |
| 3847975 | 604.12.1.9 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 | 0.54 | 38.0 | 3.86e-01 | 87.5% | 73.7% |
| 4943123 | 604.12.1.134 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › AAA | 0.54 | 40.0 | 4.20e-01 | 95.8% | 87.1% |
| 3948193 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.54 | 41.0 | 3.66e-01 | 90.6% | 55.2% |
| 3272556 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.53 | 40.0 | 3.11e-01 | 86.5% | 38.5% |
| 3232756 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.52 | 42.0 | 4.41e-01 | 100.0% | 100.0% |
| 5055323 | 3843.1.1.20 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Proton_antipo_M | 0.52 | 44.0 | 4.11e-01 | 99.0% | 75.6% |
| 3773235 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.52 | 39.0 | 4.02e-01 | 88.5% | 84.4% |
| 3512636 | 3930.1.1.6 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › Dicer_PBD | 0.52 | 36.0 | 3.43e-01 | 76.0% | 60.9% |
| 4311347 | 604.24.1.0 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in putative transcriptional regulator Jann_0659-related proteins › Helical bundle domain in putative transcriptional regulator Jann_0659-related proteins | 0.50 | 35.0 | 3.76e-01 | 88.5% | 86.3% |
| 4024521 | 109.25.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A | 0.50 | 39.0 | 3.96e-01 | 96.9% | 84.2% |
D2
high
residues 64-260
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vrqA01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 25.0 | 3.05e-01 | 100.0% | 62.9% |
| 1nezH00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 30.0 | 3.66e-01 | 100.0% | 88.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4027402 | 929.1.1.7 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin › PF29972 | 0.60 | 28.0 | 4.07e-01 | 99.5% | 97.8% |
| 4995007 | 12.1.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C | 0.59 | 23.0 | 3.37e-01 | 100.0% | 78.8% |
| 3877369 | 10.21.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 | 0.55 | 26.0 | 3.10e-01 | 100.0% | 63.7% |
| 3848442 | 10.21.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 | 0.54 | 27.0 | 3.15e-01 | 100.0% | 64.3% |
| 3988567 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 28.0 | 3.74e-01 | 100.0% | 100.0% |