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IMGVR_UViG_3300009518_000302-3300009518-Ga0116128_10036681

Arc-Vir

IMGVR_UViG_3300009518_000302-3300009518-Ga0116128_10036681

Identity

Kingdom:
archaea

Quality

86.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-99
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5i4nA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 41.0 4.02e-01 72.0% 85.9%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.59 45.0 3.56e-01 82.9% 74.7%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 37.0 3.35e-01 74.4% 46.4%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 40.0 2.73e-01 72.0% 49.1%
3uxjA01 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.57 41.0 3.74e-01 78.0% 73.7%
4eziA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 49.0 3.42e-01 96.3% 53.1%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 35.0 3.14e-01 73.2% 42.3%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 44.0 2.95e-01 85.4% 70.1%
6nobA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 47.0 3.07e-01 93.9% 89.3%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 39.0 3.37e-01 74.4% 46.1%
6nu7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 46.0 3.14e-01 93.9% 82.1%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 38.0 2.60e-01 72.0% 98.8%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.53 45.0 2.92e-01 93.9% 93.3%
3pg4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 38.0 2.81e-01 75.6% 87.4%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.53 43.0 3.38e-01 89.0% 89.8%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 40.0 2.61e-01 81.7% 81.2%
1ir3A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 35.0 3.40e-01 72.0% 82.1%
8in8C01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 41.0 3.00e-01 92.7% 96.2%
1rjbA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 36.0 3.28e-01 76.8% 98.3%
5xd7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 39.0 3.43e-01 84.1% 92.1%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.50 41.0 3.16e-01 91.5% 93.9%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4939324 5.1.4.559 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_propel 0.67 46.0 3.06e-01 70.7% 52.7%
5077400 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.65 38.0 3.51e-01 76.8% 45.2%
3974170 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 44.0 4.13e-01 70.7% 68.0%
3267504 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 44.0 2.71e-01 72.0% 26.3%
3689291 220.1.1.69 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Meiotic_rec114 0.64 45.0 3.70e-01 74.4% 87.1%
2082805 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.64 36.0 3.52e-01 70.7% 48.9%
4938400 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.64 46.0 4.12e-01 75.6% 95.7%
3480132 5.1.4.156 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.62 51.0 3.11e-01 91.5% 80.0%
3497892 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 42.0 2.58e-01 70.7% 40.0%
3802472 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.61 47.0 3.20e-01 84.1% 38.7%
3694872 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 45.0 2.86e-01 79.3% 18.9%
3481723 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.60 46.0 4.11e-01 81.7% 95.7%
3871951 5.1.4.162 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD_LRWD1 0.59 54.0 3.43e-01 100.0% 40.7%
4015241 5.1.4.51 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BNR_4 0.59 50.0 3.16e-01 93.9% 92.6%
3445272 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 44.0 2.92e-01 80.5% 31.8%
3535752 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 49.0 4.05e-01 91.5% 77.9%
3629780 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 49.0 3.21e-01 95.1% 89.2%
3516854 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 4.24e-01 90.2% 85.2%
5052256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 39.0 3.76e-01 72.0% 90.5%
2389667 2.1.1.70 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.56 36.0 3.49e-01 87.8% 56.4%
4099346 220.1.1.12 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.56 48.0 3.76e-01 95.1% 72.4%
3795915 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.56 43.0 4.10e-01 85.4% 86.0%
3024609 230.6.1.1 ↗ a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae 0.56 40.0 3.57e-01 78.0% 81.7%
3711141 3662.1.1.1 ↗ a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 0.55 41.0 3.47e-01 80.5% 94.5%
3258377 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.55 38.0 3.74e-01 73.2% 82.2%
3167022 5.1.4.31 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C 0.55 49.0 3.01e-01 100.0% 30.0%
5032856 5.1.2.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_130 0.54 46.0 3.08e-01 97.6% 85.5%
4398068 5.1.2.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.54 46.0 3.10e-01 96.3% 82.8%
1923961 4096.1.1.1 ↗ a+b two layers › NAP-like › NAP-like › NAP-like › NAP 0.54 41.0 3.21e-01 85.4% 61.8%
3931780 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.54 43.0 4.06e-01 86.6% 76.0%
3797644 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.54 43.0 3.80e-01 85.4% 72.5%
5025077 3414.1.1.0 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.54 32.0 3.71e-01 76.8% 81.7%
4069753 295.1.1.2 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA 0.53 44.0 3.76e-01 90.2% 81.5%
3372155 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 42.0 3.74e-01 90.2% 84.8%
4927417 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.52 43.0 3.15e-01 92.7% 72.1%
3701275 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 44.0 3.69e-01 92.7% 75.0%
3663088 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.52 39.0 3.15e-01 82.9% 58.9%
3595969 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.52 45.0 4.04e-01 95.1% 70.4%
3852038 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.51 43.0 4.38e-01 96.3% 93.8%
4960600 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.51 37.0 2.67e-01 75.6% 95.0%
3934135 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 40.0 3.60e-01 90.2% 99.2%
3739251 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 46.0 2.83e-01 100.0% 27.9%
3752543 7.1.1.17 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ, PDZ_6 0.51 42.0 3.84e-01 90.2% 80.0%
D2 high residues 105-221
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6x50A03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 56.0 4.64e-01 99.1% 78.1%
1hk3A03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 39.0 4.29e-01 81.2% 89.1%
3qkwB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.55 37.0 3.28e-01 84.6% 46.6%
3lucA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 33.0 3.30e-01 85.5% 56.2%
3f75P00 1.10.287.2250 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 34.0 4.09e-01 88.0% 100.0%
6xgzE01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 43.0 3.36e-01 93.2% 47.0%
5jszA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 42.0 3.26e-01 94.0% 94.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5064031 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.90 83.0 5.81e-01 100.0% 34.8%
4936311 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.88 84.0 7.00e-01 100.0% 64.3%
4400828 2004.1.1.49 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase 0.61 49.0 3.45e-01 84.6% 78.0%
3903860 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.58 44.0 4.10e-01 78.6% 86.9%
3590231 162.1.1.0 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.56 40.0 4.20e-01 82.9% 81.9%
4292840 5045.1.1.1 ↗ alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A 0.52 40.0 3.03e-01 82.1% 70.1%