←Back to structures
IMGVR_UViG_3300009519_000004-3300009519-Ga0116108_100013633
Arc-VirIMGVR_UViG_3300009519_000004-3300009519-Ga0116108_100013633
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 45-82_155-249
Domain cluster:
rep: MN988472.1__QIG67540.1__EVB41_075__00075__D60-77_141-239
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ql8A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.66 | 35.0 | 3.52e-01 | 86.5% | 48.6% |
| 2z4hA02 | 2.40.50.540 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NlpE, C-terminal domain | 0.65 | 40.0 | 4.91e-01 | 77.4% | 95.3% |
| 1a9xA06 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.62 | 48.0 | 4.09e-01 | 80.5% | 63.5% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.55 | 21.0 | 2.99e-01 | 79.7% | 73.7% |
| 2hqlA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 35.0 | 4.20e-01 | 75.2% | 100.0% |
| 6lbrA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 43.0 | 3.74e-01 | 88.0% | 77.2% |
| 2yh6D00 | 3.30.530.50 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.52 | 31.0 | 3.34e-01 | 85.7% | 70.0% |
| 2i46A00 | 2.40.50.960 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 39.0 | 3.76e-01 | 79.7% | 80.3% |
| 3cjeA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.51 | 39.0 | 3.75e-01 | 86.5% | 71.3% |
| 1yw5A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.50 | 24.0 | 3.14e-01 | 73.7% | 87.3% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3223921 | 2484.1.1.259 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26742 | 0.62 | 25.0 | 2.98e-01 | 79.7% | 51.1% |
| 4228205 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.59 | 34.0 | 3.42e-01 | 88.0% | 52.9% |
| 3695570 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.58 | 44.0 | 3.08e-01 | 80.5% | 33.4% |
| 3734729 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.57 | 44.0 | 3.61e-01 | 80.5% | 61.2% |
| 3785311 | 206.1.1.7 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase | 0.57 | 42.0 | 2.98e-01 | 76.7% | 31.9% |
| 3579622 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.56 | 28.0 | 3.09e-01 | 85.0% | 59.1% |
| 4069469 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 33.0 | 3.72e-01 | 78.9% | 77.0% |
| 2579238 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.55 | 33.0 | 3.18e-01 | 89.5% | 49.0% |
| 3511606 | 3246.1.1.0 ↗ | few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins | 0.55 | 26.0 | 3.03e-01 | 76.7% | 60.6% |
| 5045436 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 35.0 | 3.77e-01 | 94.0% | 77.9% |
| 1806521 | 331.3.1.50 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF29358 | 0.53 | 31.0 | 3.20e-01 | 85.7% | 60.5% |
| 3629868 | 5.1.4.223 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd | 0.52 | 37.0 | 2.28e-01 | 73.7% | 33.4% |
| 3278700 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 39.0 | 3.67e-01 | 78.9% | 86.9% |
| 3164580 | 2.1.1.85 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB | 0.51 | 39.0 | 4.15e-01 | 86.5% | 91.3% |
| 4600598 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 36.0 | 3.88e-01 | 75.9% | 86.1% |
D2
medium
residues 83-154
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1p16B02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 33.0 | 2.79e-01 | 94.4% | 34.6% |