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IMGVR_UViG_3300009519_000117-3300009519-Ga0116108_10001501
Arc-VirIMGVR_UViG_3300009519_000117-3300009519-Ga0116108_10001501
Identity
- Kingdom:
- archaea
Quality
78.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-122
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.77 | 59.0 | 6.32e-01 | 89.8% | 91.5% |
| 2ahoB02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.62 | 44.0 | 4.67e-01 | 88.9% | 85.7% |
| 2w7nA00 | 1.10.10.2690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.61 | 36.0 | 3.83e-01 | 86.1% | 66.0% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 46.0 | 4.73e-01 | 84.3% | 87.3% |
| 2mgxA00 | 1.20.940.10 | Mainly Alpha › Up-down Bundle › RNA Binding Protein, Prp18; Chain A › Functional domain of the splicing factor Prp18 | 0.57 | 48.0 | 4.58e-01 | 97.2% | 77.1% |
| 2yksA02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.57 | 40.0 | 3.96e-01 | 100.0% | 67.5% |
| 1b0bA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 45.0 | 4.16e-01 | 86.1% | 78.0% |
| 5b00A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.57 | 43.0 | 3.33e-01 | 82.4% | 72.4% |
| 1yhuB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 43.0 | 3.99e-01 | 86.1% | 75.7% |
| 1f5qB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 42.0 | 3.89e-01 | 98.1% | 63.8% |
| 3bulA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.53 | 38.0 | 4.19e-01 | 92.6% | 94.3% |
| 1ufhA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 45.0 | 4.07e-01 | 96.3% | 83.9% |
| 1vi0A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 37.0 | 3.37e-01 | 73.1% | 56.6% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 43.0 | 4.38e-01 | 98.1% | 93.4% |
| 2okuA00 | 1.20.120.470 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Acyl-CoA dehydrogenase, C-terminal domain | 0.52 | 38.0 | 3.74e-01 | 78.7% | 96.7% |
| 2wzkA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.52 | 45.0 | 4.49e-01 | 100.0% | 94.5% |
| 1xzpA02 | 1.20.120.430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 | 0.51 | 38.0 | 3.35e-01 | 79.6% | 89.8% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5073433 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.89 | 74.0 | 7.22e-01 | 86.1% | 90.4% |
| 4997939 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.87 | 67.0 | 7.35e-01 | 88.9% | 95.6% |
| 4998613 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.86 | 67.0 | 6.97e-01 | 85.2% | 87.0% |
| 4954526 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.84 | 71.0 | 6.95e-01 | 88.9% | 84.3% |
| 5031466 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.79 | 70.0 | 6.85e-01 | 97.2% | 88.7% |
| 5000513 | 102.3.1.1 ↗ | alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha | 0.63 | 42.0 | 4.72e-01 | 89.8% | 97.3% |
| 5044690 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.61 | 52.0 | 4.15e-01 | 92.6% | 84.1% |
| 3928690 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 50.0 | 2.97e-01 | 94.4% | 11.2% |
| 4099500 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.59 | 46.0 | 3.71e-01 | 86.1% | 80.0% |
| 3678718 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.57 | 30.0 | 3.08e-01 | 81.5% | 50.5% |
| 4029621 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.57 | 50.0 | 4.06e-01 | 99.1% | 88.4% |
| 4952080 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.56 | 43.0 | 3.53e-01 | 81.5% | 61.0% |
| 4945061 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.56 | 43.0 | 3.57e-01 | 83.3% | 88.5% |
| 4986380 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.54 | 39.0 | 3.26e-01 | 75.9% | 48.0% |
| 4955900 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.53 | 39.0 | 4.17e-01 | 93.5% | 93.3% |
| 4003862 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.52 | 41.0 | 3.24e-01 | 84.3% | 74.9% |
| 3789554 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.52 | 37.0 | 3.94e-01 | 84.3% | 90.0% |
| 3515411 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.51 | 40.0 | 3.26e-01 | 84.3% | 63.9% |
| 5051109 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.50 | 42.0 | 3.14e-01 | 92.6% | 39.7% |
| 3567981 | 2007.2.3.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase | 0.50 | 42.0 | 3.00e-01 | 96.3% | 84.5% |
D2
high
residues 144-333
Domain cluster:
rep: IMGVR_UViG_3300014911_000466-3300014911-Ga0180301_1000081927__D265-432
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4a8eA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.88 | 75.0 | 7.79e-01 | 98.4% | 93.9% |
| 1aihA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.82 | 57.0 | 6.07e-01 | 83.2% | 78.8% |
| 2a3vA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.82 | 66.0 | 6.35e-01 | 83.2% | 89.6% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.80 | 64.0 | 6.75e-01 | 83.2% | 91.3% |
| 3nkhA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.80 | 64.0 | 6.01e-01 | 82.1% | 83.3% |
| 1f44A01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.79 | 64.0 | 6.36e-01 | 83.2% | 88.7% |
| 3uxuA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.76 | 59.0 | 6.45e-01 | 100.0% | 96.9% |
| 1ae9A00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.74 | 62.0 | 6.55e-01 | 92.1% | 97.1% |
| 4acoA02 | 1.10.443.20 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Centromere DNA-binding protein complex CBF3 subunit, domain 2 | 0.66 | 62.0 | 5.02e-01 | 100.0% | 94.2% |
| 1qf8A01 | 1.10.1820.10 | Mainly Alpha › Orthogonal Bundle › protein kinase ck2 holoenzyme, chain C, domain 1 › protein kinase ck2 holoenzyme, chain C, domain 1 | 0.52 | 25.0 | 3.48e-01 | 79.5% | 90.5% |
| 1uebA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 19.0 | 2.97e-01 | 83.2% | 88.9% |
| 3tdgA01 | 3.10.450.520 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 20.0 | 3.18e-01 | 84.7% | 95.5% |
| 1aalB00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.51 | 14.0 | 2.54e-01 | 70.0% | 73.7% |
| 1bunB00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.51 | 14.0 | 2.44e-01 | 70.0% | 68.9% |
| 5c5sB00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.51 | 33.0 | 3.25e-01 | 98.4% | 60.4% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4637388 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.90 | 64.0 | 6.82e-01 | 82.6% | 81.2% |
| 5073434 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.88 | 83.0 | 8.17e-01 | 96.8% | 97.0% |
| 4940211 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.87 | 68.0 | 7.24e-01 | 82.6% | 89.4% |
| 4964439 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.87 | 70.0 | 6.70e-01 | 83.2% | 85.1% |
| 5002702 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.86 | 67.0 | 6.79e-01 | 83.2% | 80.0% |
| 4998614 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.86 | 80.0 | 7.69e-01 | 96.3% | 98.1% |
| 4997941 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.85 | 80.0 | 7.66e-01 | 96.3% | 93.8% |
| 5028306 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.85 | 68.0 | 6.99e-01 | 82.6% | 85.6% |
| 5059725 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.85 | 66.0 | 6.77e-01 | 83.2% | 82.8% |
| 4380833 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.85 | 62.0 | 6.64e-01 | 82.6% | 85.5% |
| 4992939 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.85 | 72.0 | 7.62e-01 | 95.3% | 98.2% |
| 5061203 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 67.0 | 6.71e-01 | 83.2% | 81.1% |
| 4966027 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 65.0 | 6.63e-01 | 82.6% | 81.5% |
| 4004483 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.83 | 66.0 | 6.69e-01 | 82.6% | 82.1% |
| 4954527 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.83 | 80.0 | 7.53e-01 | 100.0% | 91.8% |
| 4181053 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.83 | 67.0 | 6.60e-01 | 83.2% | 83.0% |
| 5016957 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.83 | 66.0 | 6.93e-01 | 82.6% | 94.3% |
| 4007744 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 67.0 | 6.50e-01 | 83.2% | 88.3% |
| 4453818 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.81 | 60.0 | 6.73e-01 | 96.3% | 94.7% |
| 4965169 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.81 | 65.0 | 6.29e-01 | 82.6% | 91.0% |
| 5083506 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 65.0 | 6.64e-01 | 83.2% | 85.4% |
| 4981966 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 65.0 | 6.38e-01 | 83.2% | 81.0% |
| 4999495 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 71.0 | 7.31e-01 | 97.4% | 98.3% |
| 4954640 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.80 | 74.0 | 7.30e-01 | 96.3% | 97.0% |
| 5041911 | 101.1.8.8 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 | 0.79 | 64.0 | 6.87e-01 | 98.9% | 95.8% |
| 4999472 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.79 | 74.0 | 7.42e-01 | 97.4% | 100.0% |
| 3271483 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.79 | 63.0 | 6.34e-01 | 82.6% | 91.6% |
| 4021119 | 101.1.8.7 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › NDC10_II | 0.78 | 74.0 | 5.97e-01 | 100.0% | 96.1% |
| 150341 | 101.1.8.8 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 | 0.77 | 61.0 | 6.63e-01 | 100.0% | 96.9% |
| 3964171 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.77 | 59.0 | 6.17e-01 | 83.2% | 85.1% |
| 3946063 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.77 | 72.0 | 7.21e-01 | 98.9% | 96.4% |
| 5008693 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.75 | 72.0 | 6.91e-01 | 100.0% | 98.1% |
| 4947440 | 101.1.8.26 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Ribosomal_L32p | 0.75 | 51.0 | 6.01e-01 | 96.3% | 96.3% |
| 5012504 | 101.1.8.8 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 | 0.73 | 63.0 | 6.53e-01 | 98.9% | 96.1% |
| 4962166 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 66.0 | 6.72e-01 | 98.4% | 98.9% |
| 4961917 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.71 | 66.0 | 6.67e-01 | 98.9% | 97.9% |
| 5008464 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.67 | 60.0 | 6.17e-01 | 94.2% | 99.5% |
D3
medium
residues 344-381