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IMGVR_UViG_3300009519_000117-3300009519-Ga0116108_100015064
Arc-VirIMGVR_UViG_3300009519_000117-3300009519-Ga0116108_100015064
Identity
- Kingdom:
- archaea
Quality
76.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-69
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 56.0 | 5.46e-01 | 79.6% | 80.0% |
| 1l8dA00 | 1.10.287.510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.69 | 49.0 | 3.99e-01 | 75.9% | 48.5% |
| 7rgsA01 | 1.10.1710.10 | Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain | 0.68 | 56.0 | 4.57e-01 | 88.9% | 75.5% |
| 1dvoA00 | 1.10.1710.10 | Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain | 0.67 | 56.0 | 4.11e-01 | 94.4% | 50.0% |
| 3sjqC00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 46.0 | 4.02e-01 | 75.9% | 66.3% |
| 6ruiB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.63 | 55.0 | 3.85e-01 | 100.0% | 94.5% |
| 4o5fA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.62 | 41.0 | 3.13e-01 | 100.0% | 28.3% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 43.0 | 3.60e-01 | 72.2% | 63.2% |
| 2h21A02 | 3.90.1420.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain | 0.62 | 54.0 | 3.86e-01 | 98.1% | 67.3% |
| 8axjA01 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.62 | 42.0 | 3.16e-01 | 77.8% | 27.7% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.61 | 51.0 | 4.23e-01 | 100.0% | 80.6% |
| 2kg7B00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.61 | 41.0 | 3.40e-01 | 70.4% | 44.3% |
| 4p5aC00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.61 | 53.0 | 3.51e-01 | 100.0% | 67.7% |
| 1pujA02 | 1.10.1580.10 | Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › | 0.58 | 38.0 | 3.23e-01 | 100.0% | 39.8% |
| 1r2jA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.57 | 48.0 | 3.63e-01 | 100.0% | 78.5% |
| 3swhA01 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.57 | 48.0 | 3.47e-01 | 98.1% | 56.4% |
| 2looA02 | 1.10.10.1740 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like | 0.57 | 49.0 | 4.45e-01 | 100.0% | 84.0% |
| 1tx9A00 | 1.10.1850.10 | Mainly Alpha › Orthogonal Bundle › Procapsid Of Bacteriophage Phix174, Chain 1 › Scaffold protein D | 0.56 | 46.0 | 3.54e-01 | 100.0% | 91.5% |
| 6n36A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.55 | 46.0 | 2.97e-01 | 94.4% | 43.0% |
| 2xauA04 | 1.10.10.2130 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DEAH helicase family, winged-helix domain | 0.55 | 42.0 | 4.42e-01 | 92.6% | 95.7% |
| 4l3uA00 | 1.20.1480.40 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 | 0.55 | 47.0 | 3.68e-01 | 100.0% | 65.9% |
| 3f1iS00 | 1.20.5.1940 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 38.0 | 3.46e-01 | 79.6% | 53.2% |
| 6fahC01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 45.0 | 3.59e-01 | 98.1% | 65.5% |
| 2v6eA01 | 1.10.287.3180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 42.0 | 3.89e-01 | 92.6% | 96.0% |
| 3bh1A03 | 3.40.140.40 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain | 0.52 | 35.0 | 2.62e-01 | 70.4% | 27.4% |
| 4n81A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.52 | 36.0 | 2.86e-01 | 77.8% | 90.4% |
| 5y2vC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.31e-01 | 100.0% | 50.6% |
| 3umoA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 43.0 | 2.73e-01 | 100.0% | 17.2% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3457030 | 2484.1.1.106 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 | 0.77 | 42.0 | 2.75e-01 | 72.2% | 14.0% |
| 3178076 | 207.1.1.47 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_6 | 0.69 | 50.0 | 3.13e-01 | 88.9% | 14.5% |
| 4337722 | 3001.1.1.1 ↗ | alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 | 0.69 | 43.0 | 3.71e-01 | 100.0% | 41.2% |
| 5029847 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.69 | 47.0 | 4.21e-01 | 72.2% | 80.0% |
| 3828991 | 185.1.1.0 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | 0.68 | 53.0 | 5.17e-01 | 87.0% | 83.3% |
| 3826792 | 185.1.1.0 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | 0.67 | 55.0 | 5.48e-01 | 92.6% | 94.5% |
| 5014330 | 148.1.3.402 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Rad50_zn_hook | 0.65 | 46.0 | 3.72e-01 | 75.9% | 39.1% |
| 3709866 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.65 | 56.0 | 4.97e-01 | 100.0% | 72.5% |
| 4046724 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.65 | 45.0 | 3.37e-01 | 75.9% | 31.3% |
| 3602143 | 3755.3.1.305 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook | 0.64 | 45.0 | 2.99e-01 | 75.9% | 17.9% |
| 4946411 | 633.22.1.1 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › VKOR | 0.62 | 52.0 | 3.88e-01 | 100.0% | 90.0% |
| 3269327 | 650.1.1.2 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Pam16 | 0.62 | 52.0 | 5.09e-01 | 100.0% | 96.7% |
| 3283060 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.62 | 44.0 | 3.91e-01 | 75.9% | 97.5% |
| None | — | 0.61 | 43.0 | 3.29e-01 | 74.1% | 32.8% | |
| 3937737 | 4215.1.1.0 ↗ | alpha arrays › SOCS box-like › SOCS box-like › SOCS box-like | 0.61 | 42.0 | 4.37e-01 | 100.0% | 80.0% |
| 3595946 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.60 | 50.0 | 4.80e-01 | 100.0% | 92.3% |
| 3735556 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.60 | 44.0 | 3.66e-01 | 79.6% | 74.7% |
| 3584301 | 207.1.1.144 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4 | 0.59 | 43.0 | 2.79e-01 | 79.6% | 25.5% |
| 3738098 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.58 | 40.0 | 2.66e-01 | 72.2% | 88.4% |
| 4527091 | 192.2.1.3 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Rad50_zn_hook | 0.58 | 48.0 | 3.18e-01 | 100.0% | 52.2% |
| 5023516 | 3922.1.1.269 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Rad50_zn_hook | 0.58 | 47.0 | 3.21e-01 | 100.0% | 91.1% |
| 4984959 | 3758.1.1.113 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Rad50_zn_hook | 0.57 | 40.0 | 2.51e-01 | 75.9% | 13.0% |
| 3993235 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.57 | 39.0 | 2.65e-01 | 72.2% | 86.0% |
| 4004148 | 109.4.1.1419 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27567 | 0.57 | 47.0 | 3.20e-01 | 96.3% | 43.2% |
| 3598193 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.56 | 38.0 | 3.04e-01 | 70.4% | 47.6% |
| 3182808 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.56 | 46.0 | 4.48e-01 | 100.0% | 87.7% |
| 3262871 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.56 | 39.0 | 3.50e-01 | 72.2% | 57.3% |
| 3403227 | 192.8.1.465 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CHD5 | 0.55 | 38.0 | 3.13e-01 | 75.9% | 38.2% |
| 3653692 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.55 | 47.0 | 4.30e-01 | 100.0% | 77.3% |
| 5026250 | 3755.3.1.305 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook | 0.54 | 45.0 | 3.20e-01 | 100.0% | 67.9% |
| 3378450 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.54 | 47.0 | 3.08e-01 | 98.1% | 47.8% |
| 5011721 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.53 | 37.0 | 3.68e-01 | 75.9% | 88.1% |
| 3410408 | 3712.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 | 0.53 | 37.0 | 3.28e-01 | 75.9% | 51.2% |
| 4973376 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.53 | 44.0 | 2.59e-01 | 92.6% | 30.6% |
| 3788892 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.52 | 35.0 | 3.16e-01 | 70.4% | 50.0% |
| 4300671 | 148.1.3.209 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › GrpE | 0.52 | 38.0 | 3.04e-01 | 77.8% | 38.1% |
| 1066850 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.52 | 44.0 | 2.67e-01 | 98.1% | 67.2% |
| 3839778 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.52 | 36.0 | 3.54e-01 | 75.9% | 78.3% |