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IMGVR_UViG_3300009519_000267-3300009519-Ga0116108_100101918

Arc-Vir

IMGVR_UViG_3300009519_000267-3300009519-Ga0116108_100101918

Identity

Kingdom:
archaea

Quality

88.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 54-144
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08889.17 best WbqC 85.9 5.30e-24 100.0% 42.7%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qupA00 1.20.120.490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain 0.65 51.0 4.65e-01 83.5% 85.7%
1a7eA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.62 52.0 4.76e-01 91.2% 85.6%
2a0uB01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.60 52.0 4.37e-01 97.8% 70.0%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.59 36.0 4.32e-01 80.2% 98.2%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.58 45.0 4.06e-01 84.6% 72.8%
3u9jA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.57 45.0 3.80e-01 85.7% 66.2%
5j1hA01 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 40.0 3.22e-01 74.7% 78.0%
1x4oA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.56 32.0 3.43e-01 95.6% 64.1%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.55 35.0 3.99e-01 72.5% 87.9%
1tfkB00 1.20.120.650 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Colicin D 0.55 45.0 4.64e-01 94.5% 94.2%
2gomA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.53 33.0 3.81e-01 71.4% 93.4%
3sqiA01 1.10.150.540 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.53 36.0 3.58e-01 71.4% 93.9%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.53 40.0 4.18e-01 82.4% 91.4%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.52 35.0 3.86e-01 80.2% 90.3%
4h8aB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.51 32.0 3.74e-01 83.5% 96.7%
1aabA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.51 29.0 3.07e-01 85.7% 60.2%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 33.0 3.78e-01 71.4% 98.4%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.50 35.0 3.64e-01 73.6% 100.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4457401 2005.1.1.39 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › WbqC 0.96 93.0 6.58e-01 100.0% 40.9%
5048210 2005.1.1.39 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › WbqC 0.95 91.0 6.62e-01 100.0% 42.8%
5057063 2005.1.1.39 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › WbqC 0.95 91.0 6.54e-01 100.0% 42.7%
4480533 2005.1.1.30 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › BshC 0.76 65.0 4.44e-01 100.0% 26.5%
5055941 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.60 50.0 4.79e-01 94.5% 94.3%
3990091 601.18.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 0.59 45.0 4.76e-01 93.4% 93.8%
4321701 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.57 40.0 3.56e-01 73.6% 62.2%
4118498 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.57 42.0 4.39e-01 96.7% 87.1%
3611740 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 35.0 2.50e-01 74.7% 19.0%
3782787 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.54 37.0 4.00e-01 71.4% 98.7%
5029119 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.53 38.0 3.54e-01 76.9% 78.3%
3296868 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.52 34.0 3.84e-01 83.5% 92.3%
3570048 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 36.0 3.84e-01 95.6% 83.7%
5054741 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.51 39.0 3.72e-01 83.5% 95.5%
3629836 109.20.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Coatomer subunit alpha C-terminal domain › Coatomer subunit alpha C-terminal domain › COPI_C, TPR_COPA_B 0.51 39.0 2.56e-01 85.7% 22.2%
3472797 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.51 39.0 3.47e-01 84.6% 72.1%