Back to structures

IMGVR_UViG_3300009548_000281-3300009548-Ga0116107_10053352

Arc-Vir

IMGVR_UViG_3300009548_000281-3300009548-Ga0116107_10053352

Quality

82.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 62-189
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04266.21 best ASCH 23.2 1.30e-04 84.4% 61.2%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.83 49.0 6.29e-01 85.2% 97.5%
2dp9A01 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.82 62.0 6.97e-01 89.1% 100.0%
3s9xA00 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.77 63.0 5.86e-01 85.9% 81.8%
2kkuA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.77 72.0 7.05e-01 100.0% 97.1%
1t62B00 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.77 65.0 5.91e-01 88.3% 81.6%
1xneA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.75 61.0 6.52e-01 85.9% 97.3%
1vhkA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.72 42.0 5.32e-01 86.7% 100.0%
1s04A00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.70 56.0 6.04e-01 85.2% 100.0%
2ar1A00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.70 65.0 6.06e-01 100.0% 87.3%
5dnoA00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.70 60.0 5.47e-01 100.0% 71.3%
2b78A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.69 37.0 4.89e-01 85.9% 100.0%
2gbsA00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.67 61.0 5.86e-01 100.0% 85.5%
3zv0C01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.67 41.0 3.88e-01 87.5% 51.3%
1q7hA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.66 40.0 4.72e-01 85.9% 88.4%
3vseA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.66 37.0 4.76e-01 87.5% 100.0%
2apoA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.66 40.0 4.44e-01 85.9% 76.8%
1i2dA02 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.65 54.0 4.67e-01 87.5% 72.3%
1sqwA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.64 40.0 4.81e-01 86.7% 96.4%
2as0A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.63 35.0 4.52e-01 85.9% 98.6%
1iq8A04 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.63 38.0 4.62e-01 85.9% 97.4%
3c0kA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.63 36.0 4.49e-01 86.7% 98.6%
2gksB01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.61 51.0 4.92e-01 87.5% 95.0%
1x6vA02 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.60 49.0 4.56e-01 86.7% 84.2%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 48.0 4.69e-01 88.3% 83.9%
5escA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 45.0 4.65e-01 87.5% 84.9%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.59 42.0 4.79e-01 86.7% 97.9%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 47.0 4.69e-01 89.1% 86.7%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 44.0 4.52e-01 87.5% 84.4%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 47.0 4.33e-01 89.1% 70.2%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 44.0 4.36e-01 82.8% 78.3%
2j5vA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.57 41.0 4.63e-01 85.9% 100.0%
3cr8A01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.57 46.0 4.43e-01 87.5% 76.6%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 42.0 4.38e-01 83.6% 87.1%
2ol5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 46.0 4.10e-01 89.1% 71.6%
2ln7A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.55 44.0 4.29e-01 87.5% 85.7%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 44.0 4.18e-01 88.3% 76.7%
2furB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 45.0 3.94e-01 88.3% 66.8%
3ba3B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 44.0 4.27e-01 88.3% 77.6%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 44.0 4.29e-01 88.3% 85.2%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 4.28e-01 88.3% 82.5%
3gp9A00 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.50 40.0 3.98e-01 85.2% 84.2%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081834 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.94 90.0 8.83e-01 99.2% 96.3%
5059457 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.90 86.0 8.59e-01 99.2% 98.5%
4960614 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.86 69.0 7.42e-01 82.8% 97.3%
4940231 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.83 75.0 7.39e-01 99.2% 91.0%
4229723 1.1.9.7 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.82 75.0 7.03e-01 99.2% 82.0%
4995643 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.81 77.0 7.38e-01 100.0% 91.7%
5016521 1.1.9.7 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.81 75.0 7.39e-01 99.2% 92.6%
4122172 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.81 74.0 7.59e-01 100.0% 100.0%
4950776 1.1.9.7 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.81 76.0 7.36e-01 99.2% 97.9%
4970789 1.1.9.7 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.80 75.0 7.31e-01 100.0% 90.7%
2105336 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.80 76.0 7.19e-01 100.0% 85.9%
5079450 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.80 76.0 7.33e-01 100.0% 91.4%
5023996 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.79 66.0 7.05e-01 87.5% 100.0%
5014837 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.79 74.0 6.61e-01 99.2% 87.9%
4957730 1.1.9.3 beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE 0.78 72.0 6.99e-01 100.0% 88.6%
4972120 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.78 63.0 6.82e-01 87.5% 98.2%
4954540 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.78 61.0 6.55e-01 83.6% 94.5%
4019865 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.78 64.0 6.11e-01 85.9% 85.5%
144031 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.77 63.0 5.86e-01 85.9% 81.8%
5032181 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.77 72.0 6.95e-01 98.4% 94.3%
5077279 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.77 61.0 6.36e-01 86.7% 88.3%
5070577 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.77 63.0 6.78e-01 85.2% 99.1%
4929736 1.1.9.22 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF1802 0.76 70.0 6.27e-01 98.4% 88.6%
4608277 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.76 61.0 6.14e-01 84.4% 100.0%
5023730 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.76 69.0 6.56e-01 96.1% 89.7%
4498250 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.76 61.0 6.52e-01 98.4% 97.3%
5004529 1.1.9.50 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.75 57.0 6.03e-01 99.2% 87.8%
4940359 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.75 70.0 6.17e-01 100.0% 83.9%
3954347 1.1.9.22 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF1802 0.75 68.0 6.03e-01 97.7% 83.9%
4967745 1.1.9.56 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30793 0.75 57.0 6.09e-01 100.0% 90.9%
4972117 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.75 62.0 6.44e-01 88.3% 93.3%
177 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.74 63.0 5.93e-01 89.8% 85.0%
4990496 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.74 63.0 6.66e-01 98.4% 100.0%
5024536 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.73 67.0 6.42e-01 100.0% 93.8%
5083501 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.72 50.0 5.84e-01 84.4% 100.0%
4484541 1.1.9.10 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB_C 0.69 38.0 4.85e-01 85.9% 95.7%
3208149 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.69 60.0 6.04e-01 100.0% 91.5%
4930941 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.69 61.0 5.95e-01 100.0% 87.8%
2391027 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.68 63.0 5.84e-01 99.2% 89.4%
3199787 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.68 61.0 6.06e-01 99.2% 91.9%
4999514 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.68 62.0 5.86e-01 99.2% 97.3%
4013185 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.67 62.0 5.89e-01 100.0% 84.7%
4974759 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.67 63.0 4.59e-01 100.0% 44.7%
4024158 1.1.9.17 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.67 39.0 4.76e-01 85.2% 91.3%
4991249 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.67 60.0 5.79e-01 99.2% 86.2%
4943587 1.1.9.54 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PAPS_reduct 0.66 42.0 4.91e-01 88.3% 94.1%
3252646 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 59.0 5.75e-01 100.0% 87.1%
4945851 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 40.0 4.61e-01 86.7% 84.4%
5009842 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 61.0 5.19e-01 100.0% 73.5%
4375569 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.66 40.0 4.83e-01 85.9% 96.2%
5009802 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 60.0 4.89e-01 100.0% 77.0%
5023086 1.1.9.23 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.65 56.0 5.68e-01 98.4% 92.8%
4647050 1.1.13.56 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ 0.65 39.0 4.87e-01 84.4% 96.2%
4124187 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.65 44.0 5.08e-01 86.7% 97.8%
4959440 1.1.9.16 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.65 54.0 4.87e-01 87.5% 83.5%
4997514 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.65 41.0 4.75e-01 89.8% 90.0%
5045831 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.65 37.0 4.69e-01 84.4% 100.0%
4589682 1.1.9.16 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.64 52.0 4.85e-01 85.9% 85.0%
3619452 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.64 59.0 5.55e-01 100.0% 92.3%
3220176 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.64 60.0 5.67e-01 100.0% 92.7%
5051591 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.64 39.0 4.65e-01 85.9% 95.0%
5077746 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.64 38.0 4.69e-01 85.9% 97.4%
4976672 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.63 36.0 4.56e-01 84.4% 100.0%
3934702 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.63 58.0 5.66e-01 100.0% 91.4%
4255729 1.1.9.16 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.63 52.0 4.69e-01 87.5% 81.8%
3199622 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.62 52.0 4.99e-01 89.8% 90.3%
3375062 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.62 57.0 5.27e-01 100.0% 86.3%
4999024 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.61 49.0 4.35e-01 87.5% 82.9%
4375891 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.61 40.0 4.64e-01 86.7% 94.4%
3958190 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 45.0 4.45e-01 84.4% 75.0%
4080681 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.58 42.0 4.51e-01 88.3% 88.1%
4929515 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 46.0 4.50e-01 88.3% 86.2%
4562298 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.57 42.0 4.44e-01 88.3% 85.2%
4962621 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.57 46.0 4.52e-01 88.3% 82.9%
5018380 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.56 46.0 4.38e-01 88.3% 82.7%
3977990 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.56 45.0 4.26e-01 88.3% 80.0%
1290972 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.56 41.0 4.19e-01 86.7% 78.9%
3284440 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.55 45.0 4.40e-01 87.5% 81.9%
4989950 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 42.0 4.41e-01 96.9% 98.3%
3313630 304.60.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 0.50 33.0 2.87e-01 84.4% 41.4%
5011662 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 45.0 4.30e-01 98.4% 93.3%
D2 medium residues 10-61
PDB