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IMGVR_UViG_3300009548_000290-3300009548-Ga0116107_10077508
Arc-VirIMGVR_UViG_3300009548_000290-3300009548-Ga0116107_10077508
Identity
- Kingdom:
- archaea
Quality
85.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-59_145-165
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.69 | 41.0 | 4.52e-01 | 97.4% | 73.8% |
| 1feuA01 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.62 | 42.0 | 4.03e-01 | 71.4% | 75.8% |
| 3ep6B01 | 3.30.360.50 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase | 0.55 | 24.0 | 3.16e-01 | 80.5% | 75.6% |
| 1ulyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 37.0 | 3.55e-01 | 71.4% | 69.7% |
| 3u1dB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 44.0 | 3.69e-01 | 96.1% | 74.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3927708 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 40.0 | 3.79e-01 | 72.7% | 50.0% |
| 4999907 | 2484.1.1.337 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RRXRR | 0.67 | 61.0 | 4.12e-01 | 100.0% | 68.0% |
| 3710485 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.57 | 39.0 | 3.52e-01 | 72.7% | 56.4% |
| 4968278 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.55 | 37.0 | 3.67e-01 | 70.1% | 85.9% |
| 4992977 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.55 | 38.0 | 3.28e-01 | 71.4% | 57.5% |
| 3957268 | 221.1.1.23 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF348 | 0.54 | 36.0 | 4.01e-01 | 70.1% | 93.3% |
| 5045983 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.54 | 37.0 | 3.34e-01 | 70.1% | 72.0% |
| 4950787 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.53 | 36.0 | 3.39e-01 | 70.1% | 71.6% |
| 3517966 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.53 | 38.0 | 3.30e-01 | 76.6% | 85.6% |
| 3995555 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.53 | 37.0 | 3.52e-01 | 72.7% | 64.4% |
| 4929672 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 36.0 | 3.11e-01 | 70.1% | 75.8% |
| 3738271 | 101.1.2.166 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM6_C | 0.53 | 35.0 | 3.19e-01 | 70.1% | 80.0% |
| 3597631 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 2.74e-01 | 81.8% | 54.7% |
| 4333050 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.51 | 35.0 | 3.23e-01 | 72.7% | 58.1% |
| 4978855 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.51 | 35.0 | 3.06e-01 | 71.4% | 60.8% |
D2
high
residues 69-130
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00088__D33-109
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14279.13 best | HNH_5 | 59.9 | 2.70e-16 | 82.3% | 89.3% |
| PF13395.13 | HNH_4 | 36.1 | 6.90e-09 | 79.0% | 98.2% |
| PF01844.30 | HNH | 50.6 | 2.40e-13 | 74.2% | 100.0% |