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IMGVR_UViG_3300009585_000028-3300009585-Ga0105160_10047726

Arc-Vir

IMGVR_UViG_3300009585_000028-3300009585-Ga0105160_10047726

Quality

88.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-42_60-158
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18906.6 best Phage_tube_2 38.3 1.60e-09 96.3% 30.4%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r6uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 29.0 3.51e-01 80.1% 58.0%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 48.0 4.67e-01 100.0% 66.0%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.65 58.0 5.50e-01 100.0% 82.7%
2pn5A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.63 31.0 3.69e-01 80.9% 66.7%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.63 58.0 5.68e-01 100.0% 91.3%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.62 57.0 5.37e-01 99.3% 93.2%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.61 55.0 5.37e-01 99.3% 90.5%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.61 55.0 5.26e-01 99.3% 84.4%
2ca9A02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.60 33.0 3.94e-01 77.9% 79.8%
4wtxA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 31.0 3.56e-01 80.9% 67.0%
3qt2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 28.0 3.25e-01 80.1% 61.9%
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 34.0 3.82e-01 81.6% 76.2%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 47.0 4.60e-01 100.0% 83.7%
5jtwA05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.55 34.0 3.60e-01 100.0% 69.4%
4dn9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 27.0 3.09e-01 72.1% 62.9%
4u7mA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 27.0 3.17e-01 80.1% 67.4%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 33.0 3.50e-01 81.6% 70.5%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.51 30.0 3.61e-01 94.1% 89.5%
1sqeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 27.0 3.10e-01 73.5% 68.3%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.51 32.0 3.52e-01 77.2% 78.7%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5040331 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.87 81.0 7.92e-01 97.8% 94.5%
4929634 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.85 75.0 5.73e-01 100.0% 45.6%
4954551 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.85 74.0 7.51e-01 100.0% 91.9%
3502370 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.81 77.0 7.22e-01 100.0% 95.6%
5078836 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 59.0 6.55e-01 99.3% 99.1%
3964955 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 70.0 6.58e-01 100.0% 99.4%
4873215 1.1.13.11 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.74 67.0 6.63e-01 100.0% 91.4%
4954552 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.73 69.0 6.47e-01 99.3% 96.9%
4030848 1.1.13.52 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_1 0.73 67.0 6.33e-01 100.0% 97.5%
2642579 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.71 63.0 6.44e-01 100.0% 96.9%
3058416 1.1.5.39 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.71 58.0 6.02e-01 100.0% 92.1%
5020256 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.71 35.0 4.87e-01 91.9% 98.5%
2674670 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.70 65.0 5.98e-01 100.0% 77.9%
3590380 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 65.0 5.86e-01 100.0% 85.0%
5003885 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.70 64.0 6.33e-01 100.0% 91.7%
4947204 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.69 55.0 5.84e-01 99.3% 95.0%
4957560 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 61.0 6.27e-01 99.3% 98.5%
4988100 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 59.0 6.19e-01 97.8% 99.2%
164720 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.68 48.0 4.67e-01 100.0% 66.0%
2471637 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.68 63.0 6.10e-01 100.0% 93.3%
2832217 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.66 62.0 6.09e-01 100.0% 94.4%
3059162 1.1.13.30 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 0.66 56.0 5.90e-01 97.1% 98.4%
4929752 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.65 59.0 5.62e-01 100.0% 84.5%
3942828 1.1.13.39 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 0.65 60.0 5.90e-01 100.0% 95.2%
3265120 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 58.0 5.35e-01 99.3% 84.0%
5001401 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.64 32.0 3.91e-01 91.2% 75.3%
3977123 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.63 58.0 5.48e-01 100.0% 83.7%
3264744 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.63 58.0 5.29e-01 100.0% 84.6%
4982153 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 58.0 4.56e-01 99.3% 50.0%
3969384 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 58.0 5.52e-01 100.0% 86.3%
80 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.63 57.0 5.39e-01 99.3% 83.1%
4009489 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.62 57.0 5.50e-01 100.0% 90.3%
1563850 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.61 55.0 5.25e-01 99.3% 84.4%
4018271 10.1.1.16 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Peptidase_A4 0.60 34.0 2.78e-01 100.0% 30.2%
5065758 11.12.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like 0.56 36.0 3.50e-01 83.1% 58.7%
3939131 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.56 29.0 3.41e-01 96.3% 71.6%
3291529 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 32.0 3.61e-01 75.7% 74.1%
5070570 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.53 32.0 3.57e-01 80.9% 75.2%
4969914 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.53 32.0 3.64e-01 83.1% 81.0%
D2 high residues 173-297
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18906.6 best Phage_tube_2 34.8 1.90e-08 91.2% 36.1%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.74 68.0 6.20e-01 100.0% 85.2%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.72 65.0 5.96e-01 98.4% 85.6%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 58.0 5.66e-01 96.8% 94.9%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 50.0 4.73e-01 100.0% 72.1%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 50.0 4.94e-01 100.0% 83.7%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 50.0 5.00e-01 100.0% 89.6%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.58 26.0 3.57e-01 91.2% 85.2%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.58 42.0 4.46e-01 93.6% 85.0%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 48.0 4.63e-01 100.0% 79.7%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 49.0 4.64e-01 99.2% 85.0%
3eniC00 2.50.10.10 Mainly Beta › Clam › Bacteriochlorophyll-a Protein › Bacteriochlorophyll A 0.54 49.0 3.54e-01 100.0% 52.8%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.52 43.0 4.25e-01 92.0% 89.7%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 31.0 3.35e-01 76.8% 68.5%
1lp9E02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 29.0 3.40e-01 84.8% 83.7%
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 29.0 3.58e-01 92.0% 89.9%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929634 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.81 74.0 5.62e-01 97.6% 44.8%
4954552 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.79 72.0 6.60e-01 97.6% 98.1%
5003885 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.78 71.0 6.75e-01 98.4% 93.1%
4957560 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 70.0 6.91e-01 97.6% 99.2%
2595159 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.76 69.0 6.24e-01 99.2% 83.7%
2471637 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.75 69.0 6.50e-01 100.0% 96.0%
4137973 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.75 53.0 5.63e-01 100.0% 82.7%
3964955 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 68.0 6.22e-01 97.6% 100.0%
3590380 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 68.0 6.01e-01 100.0% 86.1%
2832216 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.74 68.0 6.32e-01 99.2% 96.1%
3976188 1.1.13.1 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.74 68.0 6.16e-01 100.0% 81.2%
136185 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.74 68.0 6.20e-01 100.0% 85.2%
2389702 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.74 50.0 5.27e-01 100.0% 76.3%
2832217 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.74 67.0 6.45e-01 99.2% 96.5%
2101633 1.1.13.1 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.74 67.0 6.06e-01 100.0% 79.0%
4157825 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 67.0 6.67e-01 100.0% 100.0%
4873215 1.1.13.11 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.73 67.0 6.46e-01 100.0% 94.3%
4888726 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.73 66.0 6.05e-01 99.2% 85.4%
3977123 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.73 67.0 6.15e-01 99.2% 85.6%
2674670 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.73 66.0 5.94e-01 99.2% 79.1%
3969384 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.73 67.0 6.16e-01 99.2% 88.1%
4982153 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.73 67.0 5.14e-01 99.2% 51.1%
3615541 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 51.0 5.17e-01 88.8% 72.8%
5078836 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 60.0 6.37e-01 96.8% 100.0%
4514734 1.1.13.42 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Tail_tube 0.72 59.0 6.28e-01 96.0% 100.0%
4118973 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.72 51.0 5.22e-01 100.0% 75.8%
4398032 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.72 50.0 5.24e-01 100.0% 78.3%
1563850 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.72 65.0 5.96e-01 98.4% 85.6%
3513366 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 64.0 5.67e-01 96.8% 96.0%
3942828 1.1.13.39 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 0.71 65.0 6.17e-01 100.0% 97.9%
4646862 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.71 50.0 5.26e-01 100.0% 81.8%
3265120 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 65.0 5.79e-01 99.2% 84.6%
4409502 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.71 50.0 5.29e-01 100.0% 82.7%
3264744 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.70 65.0 5.78e-01 99.2% 84.6%
3058416 1.1.5.39 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.70 62.0 6.19e-01 98.4% 92.9%
4009489 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.70 65.0 6.00e-01 100.0% 91.0%
3502370 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.69 63.0 5.79e-01 100.0% 93.1%
4156970 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.69 50.0 5.14e-01 100.0% 79.2%
4034209 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.68 58.0 5.68e-01 91.2% 100.0%
3587074 1.1.13.17 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N 0.67 55.0 5.87e-01 96.8% 100.0%
1444177 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 58.0 5.66e-01 95.2% 94.1%
5004559 1.1.13.75 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube 0.65 54.0 5.33e-01 90.4% 100.0%
4033579 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.64 54.0 5.48e-01 92.0% 100.0%
4888732 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.64 57.0 5.30e-01 97.6% 84.0%
4036849 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.64 52.0 5.09e-01 98.4% 81.2%
164720 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 50.0 4.73e-01 100.0% 72.1%
3944430 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.61 45.0 4.90e-01 88.8% 91.4%
3965192 1.1.13.67 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2460 0.61 50.0 5.22e-01 88.8% 100.0%
5038472 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 37.0 3.92e-01 96.8% 81.8%
1930620 1133.1.1.0 beta sandwiches › Immunomodulator A46 N-terminal domain › Immunomodulator A46 N-terminal domain › Immunomodulator A46 N-terminal domain 0.52 29.0 3.67e-01 100.0% 92.1%
4301927 5084.1.1.10 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.51 40.0 3.34e-01 84.8% 79.0%