←Back to structures
IMGVR_UViG_3300009606_003406-3300009606-Ga0115102_104630261
Arc-VirIMGVR_UViG_3300009606_003406-3300009606-Ga0115102_104630261
Identity
- Kingdom:
- archaea
Quality
92.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-66
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01194.23 best | RNA_pol_N | 57.7 | 1.50e-15 | 86.5% | 75.9% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v9kA01 | 1.10.10.2050 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.73 | 54.0 | 5.48e-01 | 78.8% | 98.0% |
| 1k78A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 54.0 | 5.04e-01 | 82.7% | 68.2% |
| 3frwB00 | 1.10.1270.10 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like | 0.69 | 52.0 | 4.27e-01 | 82.7% | 44.8% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.64 | 51.0 | 4.27e-01 | 90.4% | 51.1% |
| 1dofA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.57 | 48.0 | 4.68e-01 | 100.0% | 87.5% |
| 2b4lA02 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.56 | 46.0 | 3.41e-01 | 100.0% | 75.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3641924 | 101.4.1.1 ↗ | alpha arrays › HTH › RPB10 › RPB10 › RNA_pol_N | 0.90 | 81.0 | 7.50e-01 | 98.1% | 78.5% |
| 5072435 | 101.4.1.0 ↗ | alpha arrays › HTH › RPB10 › RPB10 | 0.89 | 80.0 | 7.37e-01 | 100.0% | 78.5% |
| 5071084 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 57.0 | 5.13e-01 | 78.8% | 88.6% |
| 3979083 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.76 | 56.0 | 5.40e-01 | 78.8% | 69.5% |
| 5028009 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 53.0 | 5.87e-01 | 78.8% | 97.5% |
| 3588264 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 57.0 | 4.74e-01 | 88.5% | 66.7% |
| 4606105 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.66 | 53.0 | 4.33e-01 | 90.4% | 49.0% |
| 3405388 | 101.1.2.664 ↗ | alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC, WH_GTF3C1_N | 0.66 | 55.0 | 3.31e-01 | 100.0% | 24.7% |
| 4608916 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.64 | 46.0 | 4.61e-01 | 78.8% | 74.5% |