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IMGVR_UViG_3300009614_000103-3300009614-Ga0116104_100003494

Arc-Vir

IMGVR_UViG_3300009614_000103-3300009614-Ga0116104_100003494

Quality

78.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-72
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.75 59.0 4.10e-01 90.8% 25.8%
3u5ei01 1.10.10.1760 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36 0.68 49.0 4.92e-01 78.5% 76.1%
1wbeA01 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.66 48.0 3.52e-01 78.5% 93.5%
5dkoA02 1.10.3900.10 Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like 0.65 45.0 3.35e-01 72.3% 89.8%
2q0iA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.65 48.0 3.08e-01 78.5% 75.0%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.63 46.0 4.15e-01 80.0% 73.4%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 41.0 2.73e-01 73.8% 84.1%
8h6qD01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.59 46.0 3.05e-01 89.2% 34.9%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.58 41.0 3.39e-01 75.4% 86.2%
1qrvA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.58 39.0 3.80e-01 70.8% 94.5%
6hxlB01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.57 40.0 3.26e-01 73.8% 83.5%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 45.0 4.12e-01 92.3% 97.9%
1v9mA02 1.20.1690.10 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain 0.56 42.0 3.72e-01 83.1% 74.3%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 42.0 3.32e-01 87.7% 90.0%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 37.0 3.69e-01 75.4% 83.1%
3u5nA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.53 41.0 3.38e-01 84.6% 81.7%
2o5nA02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.53 40.0 3.14e-01 86.2% 43.3%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.51 36.0 2.87e-01 76.9% 95.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3244958 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 62.0 6.28e-01 87.7% 92.3%
3767171 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.77 55.0 4.80e-01 75.4% 57.9%
5027591 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.75 53.0 5.70e-01 75.4% 90.9%
3889817 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.75 59.0 5.55e-01 86.2% 71.2%
3842636 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 56.0 5.50e-01 80.0% 81.4%
3218285 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.74 56.0 4.90e-01 80.0% 57.9%
3243507 101.1.1.289 alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.73 55.0 5.56e-01 80.0% 87.7%
5028731 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.69 53.0 5.50e-01 86.2% 96.7%
5030241 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.68 52.0 5.37e-01 90.8% 91.7%
3962203 5051.1.1.0 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like 0.64 51.0 3.09e-01 93.8% 47.2%
4940618 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.64 49.0 4.64e-01 86.2% 80.0%
2410023 141.1.1.8 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 0.63 50.0 3.28e-01 89.2% 43.0%
3518114 592.1.1.0 alpha arrays › PWI domain-like › PWI domain › PWI domain 0.63 44.0 4.41e-01 76.9% 71.4%
3693312 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 42.0 4.38e-01 75.4% 83.3%
3165050 101.1.1.378 alpha arrays › HTH › HTH › Three-helical HTH › Terminase_2 0.58 43.0 4.25e-01 80.0% 84.3%
4231284 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.58 42.0 3.59e-01 78.5% 60.0%
3344802 6158.1.1.0 alpha bundles › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region 0.55 37.0 3.74e-01 70.8% 75.4%
3417699 101.1.1.19 alpha arrays › HTH › HTH › Three-helical HTH › SRP_SPB 0.54 45.0 3.68e-01 98.5% 54.1%
D2 medium residues 73-152
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.88 81.0 5.68e-01 100.0% 35.5%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.86 57.0 4.89e-01 72.5% 46.2%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.85 62.0 6.22e-01 82.5% 74.4%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.82 56.0 5.02e-01 78.8% 52.3%
6xj1A01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.80 74.0 5.12e-01 100.0% 62.4%
1jadA00 1.20.1230.10 Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain 0.80 72.0 5.09e-01 100.0% 90.1%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 51.0 5.22e-01 72.5% 73.1%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.74 66.0 5.72e-01 100.0% 97.6%
2pmsC00 6.10.140.920 Special › Helix non-globular › Helix Hairpins › 0.73 57.0 5.12e-01 83.7% 61.5%
1y1uA01 1.20.1050.20 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain 0.73 62.0 4.64e-01 95.0% 38.5%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 47.0 3.95e-01 70.0% 44.3%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 51.0 5.20e-01 82.5% 86.8%
6vq6G02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.65 51.0 4.01e-01 88.7% 45.7%
5yixA00 1.10.601.10 Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor 0.63 50.0 3.31e-01 85.0% 53.4%
4r16A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 34.0 2.61e-01 87.5% 21.7%
2oezA02 1.10.3900.10 Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like 0.61 42.0 3.40e-01 76.2% 35.6%
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.59 41.0 3.77e-01 71.2% 91.1%
4wqoD00 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.52 40.0 3.33e-01 82.5% 46.8%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3890086 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.95 70.0 5.29e-01 76.2% 37.6%
3838987 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.93 67.0 4.81e-01 75.0% 30.0%
4549103 3755.4.1.54 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PF30340 0.90 68.0 4.18e-01 77.5% 16.6%
3976215 105.2.1.0 alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C 0.89 66.0 5.16e-01 77.5% 40.0%
3944731 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.88 65.0 5.02e-01 77.5% 37.6%
3810801 632.22.1.139 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › KIF21A_4th 0.86 75.0 5.97e-01 93.8% 71.3%
3715005 604.8.1.0 alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo 0.85 78.0 6.12e-01 100.0% 50.6%
3396625 4177.1.1.12 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FAM92 0.84 77.0 5.44e-01 100.0% 34.8%
4468389 5086.1.1.101 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › SH3BP5 0.84 71.0 6.17e-01 93.8% 61.7%
3702347 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.83 75.0 5.80e-01 100.0% 61.7%
3915878 3922.1.1.65 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PLC-beta_C 0.83 76.0 5.45e-01 100.0% 73.4%
4030523 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.83 74.0 5.32e-01 97.5% 52.6%
4136919 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.82 75.0 5.64e-01 100.0% 44.9%
3607086 4992.1.1.0 extended segments › RelB-like › RelB-like › RelB-like 0.82 57.0 5.76e-01 73.8% 72.5%
3294656 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.82 74.0 4.71e-01 100.0% 70.1%
3609374 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.81 57.0 5.07e-01 72.5% 52.7%
3594129 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.81 72.0 5.17e-01 100.0% 35.8%
3608012 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.81 57.0 5.58e-01 73.8% 68.2%
3703824 5054.1.1.9 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › PKD_channel 0.81 69.0 4.66e-01 91.3% 27.3%
3567180 4177.1.1.61 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › PLC-beta_C 0.80 73.0 5.13e-01 100.0% 37.5%
3935633 1203.1.2.1 alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ASD2 0.79 69.0 5.18e-01 93.8% 87.0%
5048496 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.79 70.0 5.22e-01 100.0% 41.0%
3504347 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.79 54.0 5.13e-01 76.2% 60.0%
3708789 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.79 61.0 5.74e-01 82.5% 72.6%
3962942 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.78 72.0 5.75e-01 100.0% 58.0%
4671784 3755.3.1.310 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CemA 0.78 62.0 5.39e-01 88.7% 56.7%
3706526 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.78 69.0 5.61e-01 98.8% 54.0%
3600361 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.78 54.0 5.13e-01 72.5% 62.1%
3699468 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.78 69.0 5.17e-01 100.0% 47.5%
3624229 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.77 69.0 4.71e-01 100.0% 50.5%
3414672 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.77 69.0 5.21e-01 100.0% 43.2%
3235820 604.26.1.0 alpha bundles › Spectrin repeat-like › Bag6-BAG › Bag6-BAG 0.77 68.0 5.21e-01 98.8% 49.4%
3517330 603.2.1.1 alpha bundles › STAT-like › STAT › STAT › STAT_alpha 0.75 67.0 4.94e-01 100.0% 40.5%
3337008 192.2.1.60 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF21A_4th 0.75 66.0 5.52e-01 100.0% 65.0%
3740499 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.75 67.0 4.85e-01 100.0% 36.0%
3730449 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.75 67.0 4.71e-01 100.0% 32.4%
4018124 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.75 67.0 4.76e-01 100.0% 33.8%
3872946 601.19.1.55 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PF28139 0.74 65.0 4.12e-01 100.0% 19.8%
5032512 5086.1.1.234 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › CdvA 0.74 62.0 5.29e-01 95.0% 60.7%
3903775 192.8.1.419 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PF27603 0.74 62.0 5.45e-01 95.0% 62.5%
3741762 4177.1.1.8 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.73 64.0 4.56e-01 100.0% 38.0%
3743463 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.72 65.0 4.72e-01 100.0% 36.8%
4086306 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.72 63.0 4.60e-01 98.8% 52.9%
3778394 4177.1.1.26 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › PKK 0.72 69.0 4.31e-01 100.0% 24.9%
4056770 3922.1.1.339 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PF27734 0.72 62.0 4.28e-01 98.8% 27.9%
3252533 4177.1.1.8 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.71 57.0 4.20e-01 88.7% 34.0%
3931480 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.71 49.0 4.76e-01 72.5% 85.6%
3497441 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.70 62.0 4.39e-01 98.8% 32.0%
3793286 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.70 64.0 4.73e-01 100.0% 47.5%
3782160 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.70 60.0 4.03e-01 95.0% 51.8%
3470751 3755.3.1.297 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 0.69 61.0 4.89e-01 98.8% 50.0%
4649114 3559.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Med22 0.66 61.0 5.63e-01 100.0% 86.0%
4975841 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.63 49.0 4.57e-01 86.3% 66.3%
3746549 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.63 43.0 3.70e-01 70.0% 88.0%