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IMGVR_UViG_3300009616_000120-3300009616-Ga0116111_10069646
Arc-VirIMGVR_UViG_3300009616_000120-3300009616-Ga0116111_10069646
Identity
- Kingdom:
- archaea
Quality
95.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-251
Domain cluster:
rep: IMGVR_UViG_3300010342_001360-3300010342-Ga0116252_1000274450__D125-321
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04095.23 best | NAPRTase | 100.9 | 1.30e-28 | 84.1% | 74.5% |
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g95B02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.95 | 87.0 | 8.73e-01 | 98.0% | 92.9% |
| 4mzyA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.87 | 58.0 | 7.10e-01 | 90.4% | 100.0% |
| 2i14A02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.84 | 62.0 | 7.12e-01 | 98.0% | 98.4% |
| 3pfmA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.65 | 42.0 | 4.26e-01 | 80.9% | 65.0% |
| 3ktoA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 28.0 | 3.85e-01 | 79.7% | 79.5% |
| 1vcvA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.64 | 55.0 | 5.79e-01 | 91.6% | 99.1% |
| 3qkwB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.63 | 36.0 | 4.21e-01 | 81.7% | 78.2% |
| 3fn9A03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.59 | 50.0 | 4.67e-01 | 87.6% | 91.1% |
| 4ovxA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.59 | 50.0 | 4.90e-01 | 88.4% | 93.7% |
| 2iqtA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 49.0 | 4.62e-01 | 86.9% | 87.5% |
| 3dg3A02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.58 | 47.0 | 4.73e-01 | 90.4% | 83.3% |
| 1u1jA01 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.58 | 54.0 | 4.58e-01 | 100.0% | 92.1% |
| 1yixA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.57 | 48.0 | 4.74e-01 | 91.6% | 83.4% |
| 7ntgA01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.57 | 33.0 | 3.86e-01 | 80.1% | 79.7% |
| 2j6vA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.56 | 48.0 | 4.69e-01 | 91.6% | 99.3% |
| 3dhuA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 48.0 | 4.31e-01 | 92.0% | 94.2% |
| 3tfxA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 46.0 | 4.77e-01 | 91.2% | 93.1% |
| 1sxjE01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 34.0 | 4.21e-01 | 81.3% | 97.4% |
| 4hjwA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.55 | 45.0 | 3.91e-01 | 84.9% | 96.8% |
| 2ekcB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 47.0 | 4.74e-01 | 91.2% | 90.3% |
| 1abeA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 28.0 | 3.70e-01 | 81.3% | 89.9% |
| 3rotA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 29.0 | 3.79e-01 | 80.1% | 93.4% |
| 1bmtA02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.53 | 33.0 | 4.05e-01 | 72.9% | 96.8% |
| 3v3tA01 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.53 | 34.0 | 3.69e-01 | 80.9% | 76.6% |
| 2q09A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.52 | 46.0 | 4.33e-01 | 92.8% | 87.3% |
| 3knzA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.52 | 28.0 | 3.49e-01 | 80.1% | 84.9% |
| 3fkkA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 48.0 | 4.49e-01 | 98.0% | 82.6% |
| 6pwkA02 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.51 | 41.0 | 4.31e-01 | 94.0% | 91.3% |
| 3o3mD03 | 3.40.50.11900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 27.0 | 3.41e-01 | 79.7% | 84.9% |
| 6feaB01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.50 | 28.0 | 3.57e-01 | 86.5% | 91.8% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4890693 | 2002.4.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › NAPRTase | 0.98 | 86.0 | 7.93e-01 | 89.6% | 73.9% |
| 4888125 | 2002.4.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › NAPRTase | 0.97 | 90.0 | 8.22e-01 | 94.0% | 76.8% |
| 3496197 | 2002.4.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like | 0.96 | 85.0 | 7.92e-01 | 95.6% | 76.3% |
| 3898322 | 2002.4.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › NAPRTase | 0.95 | 86.0 | 7.61e-01 | 96.0% | 69.0% |
| 1778179 | 2002.4.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › NAPRTase | 0.94 | 87.0 | 7.69e-01 | 97.2% | 71.0% |
| 4853186 | 2002.1.1.128 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NAPRTase | 0.93 | 81.0 | 7.49e-01 | 94.0% | 73.7% |
| 4954704 | 2002.1.1.128 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NAPRTase | 0.92 | 84.0 | 7.88e-01 | 95.2% | 80.3% |
| 3730862 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.62 | 54.0 | 4.72e-01 | 90.0% | 88.9% |
| 2877622 | 2002.1.1.49 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldolase | 0.62 | 47.0 | 5.04e-01 | 92.0% | 89.1% |
| 4974680 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.61 | 39.0 | 4.29e-01 | 81.7% | 77.5% |
| 3283843 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.61 | 52.0 | 4.73e-01 | 88.4% | 87.1% |
| 3190760 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.61 | 55.0 | 4.60e-01 | 94.8% | 84.1% |
| 3495116 | 2002.1.1.9 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase | 0.60 | 50.0 | 4.99e-01 | 86.9% | 87.1% |
| 4969820 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.60 | 49.0 | 4.74e-01 | 85.3% | 93.6% |
| 4183983 | 2002.1.1.154 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_1 | 0.60 | 53.0 | 4.52e-01 | 95.2% | 86.7% |
| 1144707 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.59 | 50.0 | 4.90e-01 | 88.4% | 93.7% |
| 5067830 | 2002.1.1.74 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2 | 0.59 | 50.0 | 4.57e-01 | 88.8% | 97.0% |
| 4989456 | 2002.1.1.131 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › 4HFCP_synth | 0.59 | 48.0 | 5.01e-01 | 85.3% | 94.0% |
| 3287821 | 2002.1.1.50 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › F_bP_aldolase | 0.58 | 50.0 | 4.87e-01 | 89.6% | 91.6% |
| 3949167 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.58 | 49.0 | 4.49e-01 | 88.8% | 88.5% |
| 3163602 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.58 | 48.0 | 4.81e-01 | 86.9% | 100.0% |
| 5036941 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.57 | 49.0 | 4.53e-01 | 90.8% | 94.6% |
| 3950861 | 2007.1.3.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding | 0.56 | 32.0 | 3.72e-01 | 76.1% | 75.1% |
| 3781249 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 35.0 | 3.93e-01 | 80.5% | 80.5% |
| 4951426 | 2007.1.14.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro | 0.55 | 29.0 | 3.67e-01 | 80.9% | 84.0% |
| 4079413 | 2002.1.1.41 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase | 0.54 | 47.0 | 4.30e-01 | 92.4% | 85.1% |
| 4926829 | 2002.1.1.79 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF72 | 0.54 | 44.0 | 4.68e-01 | 88.8% | 95.6% |
| 4026092 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.53 | 36.0 | 4.03e-01 | 79.7% | 85.5% |
| None | — | 0.53 | 33.0 | 4.10e-01 | 80.9% | 98.7% | |
| 3740291 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.53 | 38.0 | 3.99e-01 | 90.8% | 78.7% |
| 5082040 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.52 | 45.0 | 4.17e-01 | 89.6% | 96.1% |
| 4467884 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.52 | 45.0 | 4.29e-01 | 92.8% | 87.0% |
| 3729979 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.52 | 35.0 | 3.87e-01 | 96.0% | 84.6% |
| 3233177 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.52 | 44.0 | 3.18e-01 | 90.4% | 31.8% |
| 3983390 | 2002.5.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL | 0.51 | 42.0 | 4.15e-01 | 95.2% | 79.3% |
| 5021666 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.51 | 33.0 | 3.67e-01 | 79.7% | 80.5% |
| 5023834 | 7574.1.1.5 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › TPP_enzyme_C | 0.51 | 33.0 | 4.03e-01 | 79.3% | 100.0% |
| 4105192 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.51 | 33.0 | 3.99e-01 | 92.8% | 98.8% |
D2
medium
residues 266-342
Domain cluster:
rep: MW794162.1__QVW02071.1__2017DhaN_1100__00220__D182-242