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IMGVR_UViG_3300009616_000257-3300009616-Ga0116111_10027564

Arc-Vir

IMGVR_UViG_3300009616_000257-3300009616-Ga0116111_10027564

Identity

Kingdom:
archaea

Quality

88.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-51
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rqgA02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.68 55.0 4.00e-01 94.1% 44.8%
1wkbA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.64 48.0 2.83e-01 92.2% 9.5%
2vl6A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.62 43.0 4.47e-01 76.5% 83.3%
2gnrA01 6.10.30.10 Special › Helix non-globular › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › 0.60 40.0 3.70e-01 90.2% 50.7%
2jneA00 2.10.290.10 Mainly Beta › Ribbon › Rubredoxin-like › YfgJ-like 0.58 44.0 4.13e-01 94.1% 66.2%
1m6uA00 2.60.40.1390 Mainly Beta › Sandwich › Immunoglobulin-like › NDT80 DNA-binding domain 0.57 48.0 3.10e-01 100.0% 63.0%
3axsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 44.0 2.73e-01 92.2% 43.2%
1kk1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 42.0 2.75e-01 82.4% 73.5%
2conA00 6.20.210.10 Special › Other non-globular › Herpes Virus-1 › Nin one binding (NOB1), Zn-ribbon-like 0.53 43.0 3.77e-01 94.1% 60.8%
2y27B01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 47.0 2.83e-01 100.0% 87.1%
3l2pA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.52 44.0 3.42e-01 100.0% 60.0%
1lciA03 2.30.38.10 Mainly Beta › Roll › Luciferase; domain 3 › Luciferase; Domain 3 0.52 45.0 3.95e-01 98.0% 70.1%
5eo9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.41e-01 100.0% 62.6%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4197700 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.76 50.0 3.08e-01 92.2% 12.4%
4017623 375.1.1.46 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1g 0.71 58.0 4.95e-01 92.2% 98.8%
4941232 375.1.1.204 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PolC_DP2_central 0.69 51.0 3.87e-01 100.0% 34.8%
4036787 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 51.0 5.44e-01 90.2% 97.8%
5055053 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 50.0 4.72e-01 92.2% 70.0%
3710673 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.64 51.0 3.20e-01 90.2% 17.6%
4076701 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 52.0 5.31e-01 90.2% 96.0%
4633346 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.63 53.0 2.96e-01 92.2% 8.0%
4322655 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 50.0 5.27e-01 90.2% 100.0%
5050748 375.1.1.204 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PolC_DP2_central 0.61 49.0 3.87e-01 98.0% 43.1%
4234481 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.61 50.0 2.98e-01 90.2% 12.4%
4310743 375.1.1.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 0.61 49.0 5.17e-01 88.2% 100.0%
4992515 375.1.1.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 0.60 49.0 5.03e-01 90.2% 92.0%
2873240 2005.1.1.55 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1, tRNA-synt_1e, tRNA-synt_1g 0.60 51.0 3.09e-01 96.1% 28.4%
3765704 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.60 49.0 2.78e-01 90.2% 8.2%
4944389 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 49.0 4.53e-01 92.2% 81.5%
3407008 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 45.0 3.84e-01 100.0% 51.8%
4024182 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 38.0 3.39e-01 90.2% 49.3%
3598330 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 46.0 3.34e-01 100.0% 48.1%
5078764 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 45.0 3.56e-01 98.0% 48.3%
4311589 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.69e-01 96.1% 55.3%
5027411 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.53 43.0 2.50e-01 100.0% 13.7%
3578353 2005.1.1.29 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g 0.52 42.0 2.61e-01 98.0% 26.8%
2756139 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 37.0 3.67e-01 84.3% 87.3%
3607898 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.51 41.0 4.05e-01 94.1% 89.1%