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IMGVR_UViG_3300009617_000136-3300009617-Ga0116123_10052176

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300009617_000136-3300009617-Ga0116123_10052176 ↗
Kingdom:: archaea

Quality

84.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 47-116

PDB

Domain cluster: representative

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8e9gK01	1.10.287.3510	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.84	62.0	5.68e-01	78.6%	67.0%
3vm9A02	6.10.140.2110	Special › Helix non-globular › Helix Hairpins ›	0.78	55.0	6.04e-01	74.3%	96.5%
6tejB01	1.20.1560.10	Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain	0.72	63.0	4.11e-01	97.1%	23.6%
3i2wA01	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.69	61.0	4.14e-01	100.0%	27.1%
1iipA02	1.10.150.160	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.67	50.0	4.75e-01	84.3%	67.1%
3e0sA00	1.40.20.10	Mainly Alpha › Alpha solenoid › CHAD domain › CHAD domain	0.65	55.0	3.63e-01	92.9%	34.8%
1j5wA02	1.20.58.180	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2	0.65	46.0	4.48e-01	81.4%	67.5%
3gi8C00	1.20.1740.10	Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I	0.64	57.0	3.46e-01	100.0%	80.7%
1knzA01	6.10.280.20	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain	0.63	50.0	4.49e-01	88.6%	70.6%
2rbdA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.62	50.0	3.91e-01	88.6%	68.0%
1lrzA03	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.62	46.0	4.85e-01	81.4%	93.5%
4h63K00	1.10.287.3490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.61	48.0	4.38e-01	91.4%	63.3%
1cm5A00	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.60	46.0	2.62e-01	82.9%	8.6%
3ezuA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.60	44.0	3.32e-01	81.4%	30.2%
1wpaA01	6.10.140.340	Special › Helix non-globular › Helix Hairpins ›	0.60	49.0	4.50e-01	94.3%	75.8%
5b1aC01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.59	44.0	4.47e-01	80.0%	86.8%
3kg2A05	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.59	46.0	3.89e-01	87.1%	68.0%
3r84B00	6.10.280.160	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22	0.56	47.0	4.56e-01	95.7%	83.7%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3189791	601.19.1.18 ↗	alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Mmc1_C	0.77	67.0	4.66e-01	98.6%	50.0%
3592587	3567.1.1.0 ↗	a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer	0.76	60.0	4.80e-01	82.9%	50.4%
3396806	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.66	47.0	4.35e-01	75.7%	64.4%
4535684	3826.1.1.25 ↗	alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › GlutR_dimer	0.65	48.0	4.66e-01	80.0%	72.5%
3970234	3826.1.1.0 ↗	alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR)	0.65	48.0	4.66e-01	80.0%	72.5%
2555592	5069.1.1.3 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cyt_bd_oxida_I	0.61	53.0	4.95e-01	95.7%	83.5%
5078048	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.61	47.0	4.70e-01	88.6%	84.0%

D2 medium residues 117-175

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4hb1A00	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.53	36.0	3.97e-01	93.2%	95.5%
2k85A00	1.10.10.440	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain	0.53	39.0	3.79e-01	83.1%	72.3%
3ilxA02	1.10.287.2170	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	34.0	3.76e-01	94.9%	90.9%
4na1B02	1.10.1240.100	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 ›	0.51	39.0	3.41e-01	84.7%	76.8%
4bzaA01	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.50	33.0	3.26e-01	98.3%	58.8%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3967251	2004.1.1.514 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_29, SbcC_Walker_B	0.53	45.0	2.63e-01	98.3%	91.4%
4116779	603.1.1.174 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › HisKA	0.50	36.0	3.38e-01	100.0%	61.3%