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IMGVR_UViG_3300009618_000029-3300009618-Ga0116127_100074328

Arc-Vir

IMGVR_UViG_3300009618_000029-3300009618-Ga0116127_100074328

Quality

84.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-79
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05016.22 best ParE_toxin 40.4 5.10e-10 98.7% 92.1%
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cegD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.95 91.0 7.97e-01 100.0% 90.1%
3kxeA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.93 88.0 7.98e-01 100.0% 89.4%
5cw7B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.91 86.0 7.78e-01 100.0% 89.4%
7bwfA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.90 83.0 7.84e-01 100.0% 94.3%
3g5oC00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.89 83.0 7.80e-01 100.0% 88.5%
4ml0B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.86 80.0 7.44e-01 100.0% 91.1%
3bpqD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.84 78.0 7.34e-01 98.6% 89.5%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.67 47.0 2.99e-01 73.0% 29.1%
1itvA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.67 42.0 3.06e-01 98.6% 24.1%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 34.0 3.65e-01 100.0% 55.4%
3i2nA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 42.0 2.68e-01 100.0% 14.2%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.64 47.0 4.93e-01 100.0% 86.6%
1khiA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 38.0 3.88e-01 100.0% 59.7%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 44.0 2.83e-01 70.3% 21.6%
2htaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 39.0 2.63e-01 71.6% 15.5%
3er0A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 36.0 3.65e-01 100.0% 56.2%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 44.0 2.79e-01 77.0% 30.4%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.84e-01 100.0% 49.6%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 46.0 3.92e-01 95.9% 53.7%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 36.0 3.91e-01 90.5% 76.2%
1e8uA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 41.0 2.53e-01 100.0% 12.6%
3k0yA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.55 31.0 3.29e-01 100.0% 58.5%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.55 48.0 3.95e-01 98.6% 70.0%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.54 34.0 3.77e-01 98.6% 83.9%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 47.0 4.13e-01 98.6% 78.1%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 34.0 3.53e-01 90.5% 67.6%
3nhqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 46.0 4.03e-01 100.0% 67.2%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 3.98e-01 100.0% 70.7%
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.54 39.0 2.88e-01 77.0% 97.9%
7bj4A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 47.0 2.97e-01 98.6% 97.7%
1jofA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.75e-01 100.0% 17.8%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 44.0 3.99e-01 94.6% 85.6%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 38.0 2.70e-01 90.5% 22.7%
6h5bB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 45.0 3.90e-01 97.3% 77.3%
4orlA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 46.0 4.09e-01 100.0% 76.4%
1httA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 45.0 3.13e-01 98.6% 43.8%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 36.0 3.16e-01 73.0% 100.0%
4aezA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 2.89e-01 94.6% 83.7%
4i9xA00 2.60.40.3790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.32e-01 98.6% 63.1%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.51 34.0 3.52e-01 98.6% 72.2%
4irzA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.50 41.0 2.60e-01 94.6% 98.6%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 44.0 3.71e-01 100.0% 88.4%
4l8oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 44.0 3.44e-01 100.0% 59.8%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5005256 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.97 93.0 8.81e-01 100.0% 91.8%
5030204 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.97 91.0 9.06e-01 98.6% 96.0%
5027803 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.96 92.0 8.91e-01 100.0% 92.5%
4940748 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.96 89.0 8.50e-01 100.0% 86.7%
1712440 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.95 90.0 7.88e-01 100.0% 88.3%
4966674 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.94 90.0 8.54e-01 100.0% 88.2%
3955817 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.94 90.0 8.00e-01 100.0% 87.8%
4585524 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.94 89.0 8.25e-01 100.0% 94.4%
5080208 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.94 89.0 8.21e-01 100.0% 87.8%
2966315 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.93 88.0 7.98e-01 100.0% 89.5%
4402856 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.93 87.0 8.05e-01 98.6% 93.3%
4984297 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.93 88.0 8.13e-01 100.0% 86.7%
4994192 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.92 87.0 8.50e-01 100.0% 95.0%
5071213 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.92 87.0 8.50e-01 100.0% 95.0%
4937857 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.92 87.0 8.45e-01 100.0% 92.5%
5018712 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.92 87.0 8.06e-01 100.0% 90.0%
5063859 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.92 87.0 8.48e-01 100.0% 95.0%
3986903 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.92 85.0 8.07e-01 98.6% 98.8%
4949569 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.91 86.0 7.97e-01 100.0% 85.6%
5018720 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.91 85.0 8.09e-01 100.0% 91.8%
5075086 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.91 86.0 8.38e-01 100.0% 92.5%
4968774 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.91 85.0 8.53e-01 98.6% 98.7%
5044967 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.91 85.0 7.91e-01 100.0% 88.9%
4463632 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.91 86.0 7.95e-01 100.0% 94.4%
1877168 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.91 86.0 7.85e-01 100.0% 91.3%
5080337 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.90 85.0 7.94e-01 100.0% 86.5%
4941220 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.90 85.0 8.28e-01 100.0% 92.5%
4646165 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.90 85.0 7.89e-01 100.0% 92.2%
5080427 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.89 84.0 8.18e-01 100.0% 92.5%
3982278 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.89 80.0 7.40e-01 94.6% 88.9%
4887373 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.89 83.0 8.14e-01 100.0% 97.5%
4959351 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.89 81.0 7.92e-01 100.0% 90.0%
4544637 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.89 83.0 7.64e-01 100.0% 91.4%
4966797 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.88 82.0 7.82e-01 100.0% 91.8%
4967722 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.88 81.0 7.88e-01 98.6% 93.8%
5014619 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.88 82.0 8.01e-01 100.0% 93.8%
5029202 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.87 79.0 7.54e-01 100.0% 85.9%
4463880 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.86 80.0 7.05e-01 100.0% 83.5%
2770566 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.86 79.0 7.27e-01 100.0% 93.5%
5029970 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.85 79.0 7.11e-01 100.0% 76.8%
3166135 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.85 79.0 7.21e-01 100.0% 80.0%
169853 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.85 78.0 7.44e-01 98.6% 89.4%
4937762 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.85 78.0 7.29e-01 100.0% 90.0%
4966645 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.80 66.0 6.81e-01 100.0% 94.2%
5061910 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.79 70.0 7.06e-01 97.3% 96.0%
5028231 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.79 71.0 6.15e-01 100.0% 77.0%
3526903 4312.2.1.0 a+b two layers › RelE-like › YaeB-like › YaeB-like 0.76 70.0 6.26e-01 100.0% 85.9%
5007064 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.76 68.0 6.78e-01 100.0% 97.3%
3964028 4312.2.1.1 a+b two layers › RelE-like › YaeB-like › YaeB-like › TrmO_C 0.76 63.0 6.27e-01 100.0% 88.0%
3276550 4312.2.1.0 a+b two layers › RelE-like › YaeB-like › YaeB-like 0.75 69.0 6.38e-01 100.0% 94.6%
4968449 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.75 60.0 6.37e-01 98.6% 98.5%
4993636 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.72 62.0 6.35e-01 100.0% 98.6%
5042309 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.69 62.0 5.82e-01 100.0% 82.2%
3567876 316.1.1.20 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › OAS1_C 0.64 46.0 3.51e-01 75.7% 88.9%
163179 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.63 39.0 2.63e-01 71.6% 15.5%
4964835 223.2.1.63 a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 0.61 52.0 4.48e-01 94.6% 86.1%
4978955 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 50.0 4.24e-01 100.0% 54.6%
3763965 5.1.4.341 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_2nd 0.59 41.0 2.61e-01 71.6% 17.7%
3741339 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 52.0 4.81e-01 97.3% 96.8%
3620870 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 49.0 4.46e-01 100.0% 69.0%
5069323 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 35.0 3.99e-01 98.6% 96.0%
4867287 304.48.1.12 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mononeg_RNA_pol 0.55 43.0 2.80e-01 87.8% 49.4%
5005178 2006.1.3.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.55 36.0 2.87e-01 100.0% 33.3%
4954869 2006.1.3.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.52 35.0 2.93e-01 75.7% 40.0%
4987386 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 35.0 3.17e-01 73.0% 70.9%
4972031 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 43.0 3.63e-01 97.3% 76.3%
3217385 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 42.0 4.06e-01 94.6% 97.6%