←Back to structures

IMGVR_UViG_3300009618_000029-3300009618-Ga0116127_100074339

Arc-Vir

IMGVR_UViG_3300009618_000029-3300009618-Ga0116127_100074339

Identity

Kingdom:
archaea

Quality

87.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-58
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.71 60.0 5.13e-01 100.0% 63.7%
3kqxL01 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.69 57.0 3.88e-01 92.3% 46.8%
7x4nE01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.68 50.0 3.07e-01 78.8% 60.9%
3q9tA02 3.30.560.10 Alpha Beta › 2-Layer Sandwich › Glucose Oxidase; domain 3 › Glucose Oxidase, domain 3 0.66 56.0 3.51e-01 100.0% 36.3%
4g7nA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.65 54.0 4.56e-01 100.0% 54.6%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 47.0 3.51e-01 76.9% 91.5%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.65 55.0 4.61e-01 100.0% 59.8%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 50.0 3.40e-01 90.4% 27.8%
3ty2A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.63 43.0 2.79e-01 73.1% 59.6%
4mfzA02 3.40.630.120 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.61 50.0 3.74e-01 98.1% 36.7%
3g7qA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.60 41.0 2.76e-01 73.1% 38.8%
2w5qA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.59 48.0 4.07e-01 94.2% 60.2%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.58 47.0 4.48e-01 90.4% 77.0%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.57 47.0 4.14e-01 100.0% 75.0%
1v9kA00 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.56 47.0 3.15e-01 96.2% 91.6%
4xsqB00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.56 36.0 2.61e-01 86.5% 19.6%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 48.0 4.07e-01 100.0% 65.9%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.55 44.0 3.19e-01 100.0% 82.4%
4gr5C01 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.55 44.0 4.14e-01 90.4% 73.4%
1ii7A01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.55 47.0 3.05e-01 98.1% 29.3%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 44.0 3.75e-01 100.0% 54.1%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 44.0 3.35e-01 100.0% 59.4%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.52 39.0 3.96e-01 92.3% 86.0%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 44.0 4.03e-01 96.2% 72.5%
5cq2A02 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.52 33.0 3.62e-01 73.1% 72.1%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 41.0 3.57e-01 100.0% 54.6%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.51 42.0 2.55e-01 100.0% 12.4%
3kmaA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.51 38.0 3.19e-01 86.5% 63.8%
3qr8A02 6.20.150.10 Special › Other non-globular › Chondroitinase Ac; Chain A, domain 3 › 0.51 29.0 2.67e-01 75.0% 35.6%
1zpuA03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.51 34.0 2.36e-01 71.2% 63.1%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 38.0 2.51e-01 82.7% 19.7%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587510 101.1.1.32 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma54_DBD 0.66 44.0 3.17e-01 82.7% 24.0%
3265851 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.65 45.0 4.96e-01 80.8% 95.0%
3623319 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.63 52.0 4.67e-01 100.0% 80.0%
3586791 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.62 37.0 4.33e-01 71.2% 88.6%
3975292 7515.1.1.2 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.62 46.0 2.82e-01 100.0% 11.7%
5026943 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 48.0 3.44e-01 92.3% 27.9%
3928048 261.1.1.1 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.61 49.0 2.88e-01 90.4% 10.8%
4473615 513.1.1.1 ↗ a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 0.61 47.0 3.98e-01 88.5% 60.6%
3722558 331.23.1.4 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.60 51.0 4.47e-01 98.1% 88.7%
3216556 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 44.0 3.12e-01 78.8% 32.1%
4222853 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.60 50.0 3.98e-01 100.0% 76.5%
4345169 101.1.1.33 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 44.0 3.28e-01 82.7% 87.6%
4064579 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.59 45.0 3.54e-01 100.0% 38.3%
3523606 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.59 42.0 2.56e-01 100.0% 10.8%
None — 0.59 47.0 3.70e-01 92.3% 60.8%
4505937 513.1.1.1 ↗ a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 0.58 43.0 3.81e-01 84.6% 65.9%
None — 0.58 51.0 2.80e-01 100.0% 28.1%
3624687 64.1.1.9 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW_TCERG1 0.58 47.0 4.84e-01 96.2% 96.0%
3217609 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.58 38.0 4.05e-01 71.2% 81.4%
3620592 6155.1.1.15 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF846 0.58 45.0 3.43e-01 92.3% 72.1%
3218122 376.1.3.11 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H_2 0.57 49.0 3.65e-01 100.0% 93.6%
4959771 2002.1.1.450 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › LAM_C 0.57 42.0 2.54e-01 84.6% 20.5%
3335794 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 45.0 2.97e-01 90.4% 65.1%
3800040 5.1.4.422 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Rol-3 0.56 40.0 2.63e-01 94.2% 17.3%
3749416 2007.15.1.11 ↗ a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › MAP3K_TRAF_bd 0.56 47.0 2.87e-01 96.2% 14.8%
3621074 109.4.1.353 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MOR2-PAG1_N 0.56 47.0 2.70e-01 100.0% 15.2%
3467157 109.4.1.1409 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_LIN_C, ARM_LIN_2nd 0.55 46.0 2.82e-01 94.2% 16.7%
3301455 2484.1.1.109 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › bVLRF1 0.55 48.0 3.26e-01 100.0% 34.4%
4948537 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.55 46.0 2.87e-01 100.0% 18.0%
3338669 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.54 41.0 4.02e-01 82.7% 76.4%
3624723 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.54 44.0 2.74e-01 92.3% 48.8%
3398904 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.54 44.0 3.07e-01 92.3% 31.1%
4510171 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 47.0 2.87e-01 100.0% 41.4%
4319130 7527.1.1.1 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE 0.53 41.0 2.70e-01 86.5% 23.2%
3368395 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 38.0 2.42e-01 82.7% 34.1%
3790336 5.1.3.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_Rol-3 0.52 45.0 2.96e-01 100.0% 48.5%
3925273 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.51 41.0 3.24e-01 92.3% 61.7%
3964337 4091.1.1.1 ↗ beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD 0.51 38.0 2.67e-01 88.5% 21.7%
4534207 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.51 38.0 2.64e-01 86.5% 22.4%
3682917 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.50 39.0 2.76e-01 92.3% 31.0%
3172478 708.1.1.30 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › PF30069, PF30070 0.50 44.0 3.09e-01 100.0% 67.3%