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IMGVR_UViG_3300009618_000238-3300009618-Ga0116127_10054503

Arc-Vir

IMGVR_UViG_3300009618_000238-3300009618-Ga0116127_10054503

Quality

86.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-64
PDB
D3 high residues 186-355
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13328.13 best HD_4 37.9 2.10e-09 90.0% 75.6%
PF01966.29 HD 28.3 2.70e-06 66.5% 94.0%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7smgD00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.95 74.0 8.18e-01 100.0% 95.8%
1vj7B01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.91 68.0 6.80e-01 100.0% 75.1%
3nqwA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.88 77.0 7.57e-01 100.0% 85.4%
7qocA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.81 73.0 7.02e-01 100.0% 84.5%
5b1oA00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.80 26.0 4.42e-01 72.4% 81.5%
2pjqA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.76 39.0 5.36e-01 72.4% 96.6%
3mzoB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.63 59.0 5.45e-01 98.2% 81.0%
3i7aA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.63 57.0 4.72e-01 100.0% 57.7%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.62 41.0 4.54e-01 90.0% 81.3%
1ux8A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 39.0 4.54e-01 91.2% 92.4%
3memA02 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.60 56.0 4.50e-01 100.0% 54.5%
5tk8A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.60 55.0 5.31e-01 98.2% 87.4%
6wk3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 38.0 4.07e-01 87.6% 74.5%
2ig3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 36.0 4.03e-01 90.6% 84.3%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.53 32.0 3.91e-01 90.6% 96.1%
2lqgA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 31.0 3.45e-01 91.2% 70.3%
4x28C03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 33.0 3.59e-01 91.2% 74.1%
1hlbA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 39.0 4.02e-01 91.2% 82.8%
8hk0B03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 30.0 3.33e-01 90.6% 69.6%
3vhlA02 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.51 31.0 3.71e-01 97.6% 87.5%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4959337 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.95 74.0 8.24e-01 100.0% 97.1%
3973478 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.90 78.0 7.66e-01 100.0% 84.4%
4606782 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.89 75.0 7.48e-01 100.0% 84.0%
3265073 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.88 76.0 7.11e-01 100.0% 75.5%
3584809 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.86 75.0 7.10e-01 100.0% 78.8%
3961396 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.86 72.0 6.91e-01 100.0% 77.4%
3683167 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.81 71.0 6.78e-01 100.0% 81.1%
1503542 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.80 61.0 6.37e-01 91.2% 84.1%
3386161 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.80 71.0 6.58e-01 100.0% 76.6%
3573746 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.79 52.0 5.94e-01 78.2% 86.2%
4928828 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.79 76.0 6.71e-01 100.0% 73.5%
4215090 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.79 69.0 6.44e-01 100.0% 75.6%
3665874 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.76 72.0 6.53e-01 100.0% 77.2%
3513291 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.75 65.0 6.15e-01 100.0% 76.5%
3974149 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.73 67.0 6.25e-01 100.0% 79.0%
3196273 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.72 68.0 6.18e-01 100.0% 84.5%
4379676 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.54 34.0 4.17e-01 77.1% 100.0%
3692378 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.53 42.0 3.35e-01 82.9% 41.2%
5045200 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.51 45.0 3.66e-01 92.9% 85.4%
4021032 4954.1.1.0 a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit 0.51 30.0 2.91e-01 82.9% 46.5%
D4 high residues 363-420
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 47.0 4.55e-01 100.0% 65.7%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 48.0 4.62e-01 98.3% 71.2%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 43.0 4.32e-01 94.8% 68.9%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 45.0 4.36e-01 100.0% 69.7%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 48.0 4.65e-01 98.3% 75.8%
4i8iA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.61 52.0 3.48e-01 100.0% 46.3%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 45.0 4.35e-01 100.0% 70.1%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.61 46.0 3.30e-01 100.0% 27.6%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 38.0 4.20e-01 94.8% 94.9%
2lojA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.59 32.0 3.70e-01 72.4% 71.8%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.59 50.0 3.98e-01 98.3% 47.4%
4z32A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.69e-01 100.0% 50.0%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 39.0 3.85e-01 94.8% 67.2%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.56 39.0 3.72e-01 100.0% 61.4%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 46.0 4.21e-01 94.8% 84.8%
4dzoA02 3.30.457.60 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.55 40.0 3.62e-01 75.9% 87.0%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.55 46.0 3.30e-01 100.0% 55.2%
3rbtD01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 44.0 3.57e-01 96.6% 64.8%
6cxhA03 2.60.40.1580 Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 0.54 39.0 3.00e-01 77.6% 69.1%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 46.0 4.08e-01 100.0% 90.8%
1v57A03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 43.0 3.35e-01 96.6% 92.4%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 36.0 3.00e-01 100.0% 39.6%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 3.27e-01 93.1% 50.6%
1yarH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 40.0 2.71e-01 81.0% 39.4%
3m4aA03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.52 45.0 3.62e-01 100.0% 92.4%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.52 34.0 3.56e-01 93.1% 74.1%
6x5vA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.20e-01 77.6% 62.5%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.57e-01 100.0% 62.0%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 2.88e-01 91.4% 91.2%
3plsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 42.0 3.55e-01 94.8% 79.8%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.90e-01 98.3% 92.0%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.18e-01 100.0% 44.0%
3ztvA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.51 39.0 2.51e-01 89.7% 82.5%
5hy7B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 37.0 2.37e-01 81.0% 25.8%
1obsA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.50 39.0 3.58e-01 94.8% 62.7%
3ktzA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.50 40.0 3.62e-01 94.8% 63.9%
2lqoA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 42.0 3.73e-01 98.3% 96.6%
1lu4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 39.0 3.09e-01 89.7% 79.1%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4172704 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.73 47.0 4.82e-01 96.6% 69.1%
5039266 321.1.1.7 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.64 53.0 3.24e-01 93.1% 45.9%
3260618 230.3.1.1 a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.64 52.0 4.28e-01 98.3% 60.0%
3990001 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.62 39.0 4.10e-01 89.7% 69.8%
4943272 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 40.0 4.02e-01 93.1% 65.0%
665 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.62 44.0 4.29e-01 100.0% 67.2%
1156539 2007.5.1.11 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › DUF4886 0.61 52.0 3.48e-01 100.0% 46.3%
4178886 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 45.0 3.77e-01 98.3% 46.0%
4424678 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.61 47.0 4.54e-01 100.0% 75.4%
3971285 2485.1.1.40 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N_3 0.61 51.0 4.22e-01 98.3% 75.2%
3890480 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.60 46.0 4.31e-01 100.0% 66.7%
3790904 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.59 40.0 4.02e-01 94.8% 70.0%
4025072 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.59 47.0 3.75e-01 98.3% 43.5%
3177024 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 53.0 4.21e-01 98.3% 60.9%
5059435 2485.1.1.61 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DCC1-like 0.57 49.0 4.31e-01 100.0% 96.7%
4802815 5.1.3.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neuraminidase 0.57 47.0 3.27e-01 96.6% 32.9%
3227575 3009.1.1.0 alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like 0.57 45.0 3.16e-01 91.4% 97.1%
3438031 2492.1.1.8 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 0.56 43.0 3.05e-01 89.7% 78.5%
5023580 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 38.0 3.78e-01 100.0% 66.2%
3985490 192.2.1.5 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.56 47.0 3.68e-01 100.0% 44.4%
3225196 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.55 45.0 3.75e-01 93.1% 82.4%
3365937 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.54 41.0 4.14e-01 94.8% 83.3%
428210 3243.1.1.1 alpha complex topology › VopL dimerization domain › VopL dimerization domain › VopL dimerization domain › VCD 0.54 47.0 3.21e-01 100.0% 25.7%
5016556 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 34.0 2.95e-01 79.3% 40.0%
3321176 5051.1.1.6 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.54 44.0 2.72e-01 100.0% 65.5%
3783976 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 42.0 3.68e-01 98.3% 56.7%
3474625 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.53 43.0 3.45e-01 94.8% 76.0%
3967370 620.1.1.2 alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.53 45.0 3.32e-01 98.3% 53.1%
3493906 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.53 41.0 4.10e-01 93.1% 85.0%
3942661 620.1.1.2 alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.52 45.0 3.34e-01 98.3% 55.5%
3772995 304.166.1.9 a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 0.52 41.0 3.31e-01 94.8% 41.6%
4660169 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.52 44.0 3.83e-01 98.3% 98.9%
4389192 7512.1.1.18 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycogen_syn 0.52 40.0 2.59e-01 89.7% 32.9%
4161761 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.54e-01 100.0% 51.8%
1681454 304.166.1.9 a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 0.51 41.0 3.36e-01 94.8% 45.7%
3797728 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 37.0 3.40e-01 100.0% 56.5%
4966557 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 39.0 2.57e-01 96.6% 89.3%