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IMGVR_UViG_3300009618_000729-3300009618-Ga0116127_10021786
Arc-VirIMGVR_UViG_3300009618_000729-3300009618-Ga0116127_10021786
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-71_179-212_247-261
Domain cluster:
rep: 04302015_21_scaffold_10_prodigal-single.1__X__X__00335__D1-66_148-183_219-231
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF15515.13 best | MvaI_BcnI | 55.8 | 8.80e-15 | 50.0% | 24.6% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2odhA01 | 3.40.210.20 | Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › MvaI/BcnI restriction endonuclease, catalytic domain | 0.88 | 81.0 | 8.10e-01 | 96.7% | 100.0% |
| 2oaaB01 | 3.40.210.20 | Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › MvaI/BcnI restriction endonuclease, catalytic domain | 0.86 | 72.0 | 7.62e-01 | 94.2% | 96.3% |
| 1azoA00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.69 | 62.0 | 5.07e-01 | 96.7% | 96.7% |
| 1tx3D00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.68 | 56.0 | 4.40e-01 | 88.3% | 87.7% |
| 2ezvA01 | 3.40.600.40 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Type II restriction enzyme SfiI, multifunctional domain | 0.65 | 55.0 | 4.71e-01 | 93.3% | 74.1% |
| 2qx2A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.60 | 44.0 | 3.27e-01 | 76.7% | 64.5% |
| 3vx8A01 | 3.40.140.100 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain | 0.52 | 40.0 | 3.84e-01 | 81.7% | 82.3% |
| 5h8iI00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.52 | 43.0 | 3.32e-01 | 93.3% | 84.6% |
| 2oap202 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 41.0 | 3.15e-01 | 87.5% | 69.7% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5047010 | 2008.1.1.63 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MvaI_BcnI | 0.86 | 73.0 | 5.76e-01 | 88.3% | 100.0% |
| 119403 | 2008.1.1.63 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MvaI_BcnI | 0.85 | 78.0 | 6.05e-01 | 96.7% | 100.0% |
| 4571342 | 2008.1.1.190 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27258 | 0.78 | 70.0 | 6.15e-01 | 95.8% | 97.1% |
| 5035680 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.69 | 58.0 | 5.09e-01 | 90.8% | 96.1% |
| 163462 | 2008.1.1.63 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MvaI_BcnI | 0.69 | 61.0 | 4.73e-01 | 94.2% | 98.0% |
| 2526356 | 2008.1.1.48 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_NgoBV | 0.69 | 58.0 | 4.64e-01 | 92.5% | 77.4% |
| 11017 | 2008.1.1.42 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Endonuc-HincII | 0.69 | 57.0 | 4.44e-01 | 88.3% | 87.6% |
| 4973214 | 2008.1.1.210 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27324 | 0.68 | 57.0 | 4.96e-01 | 89.2% | 73.9% |
| 4059011 | 2008.1.1.48 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_NgoBV | 0.68 | 56.0 | 5.04e-01 | 90.0% | 87.6% |
| 159540 | 2008.1.1.55 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RestrictionSfiI | 0.67 | 57.0 | 4.44e-01 | 93.3% | 82.0% |
| 3602814 | 2008.1.1.210 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27324 | 0.66 | 54.0 | 4.68e-01 | 87.5% | 83.8% |
| 4990951 | 3535.1.1.0 ↗ | a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 | 0.57 | 43.0 | 4.21e-01 | 81.7% | 97.0% |
| 1298549 | 1.1.9.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SRA | 0.55 | 45.0 | 4.21e-01 | 88.3% | 87.8% |
| 4219689 | 1.1.9.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA | 0.53 | 47.0 | 3.93e-01 | 100.0% | 73.1% |
| 4937420 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.52 | 41.0 | 2.74e-01 | 85.0% | 40.6% |
| 3589357 | 3425.2.1.3 ↗ | a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain › PF29809 | 0.52 | 42.0 | 3.53e-01 | 90.8% | 77.8% |
| 4989783 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.51 | 41.0 | 2.78e-01 | 85.0% | 43.3% |
| 4976411 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 40.0 | 2.68e-01 | 84.2% | 40.6% |
| 5009374 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.51 | 40.0 | 2.68e-01 | 86.7% | 36.1% |
| 5055415 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.51 | 41.0 | 2.75e-01 | 86.7% | 41.0% |
| 5005193 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.50 | 40.0 | 2.62e-01 | 85.0% | 36.6% |
| 5079783 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 40.0 | 2.67e-01 | 85.8% | 39.0% |
| 5044192 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.50 | 41.0 | 2.79e-01 | 87.5% | 42.9% |
D2
medium
residues 72-178_213-246
Domain cluster:
rep: 04302015_21_scaffold_10_prodigal-single.1__X__X__00335__D67-147_184-218
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF15515.13 best | MvaI_BcnI | 51.9 | 1.40e-13 | 78.0% | 39.9% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oa9B02 | 3.30.70.3570 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain | 0.80 | 69.0 | 7.31e-01 | 100.0% | 99.2% |
| 2odhA02 | 3.30.70.3570 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain | 0.80 | 61.0 | 6.88e-01 | 100.0% | 100.0% |
| 2bolA03 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 35.0 | 4.16e-01 | 97.9% | 84.9% |
| 1ge8A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.54 | 36.0 | 3.09e-01 | 98.6% | 39.5% |
| 3o46A00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.52 | 30.0 | 3.69e-01 | 89.4% | 94.0% |
| 2n54B00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 23.0 | 3.12e-01 | 72.3% | 84.8% |
| 1glvA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.50 | 31.0 | 3.46e-01 | 99.3% | 78.7% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4967196 | 2008.1.1.63 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MvaI_BcnI | 0.84 | 72.0 | 7.45e-01 | 100.0% | 92.6% |
| 5047010 | 2008.1.1.63 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MvaI_BcnI | 0.76 | 74.0 | 6.12e-01 | 100.0% | 68.9% |
| 4928787 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.64 | 33.0 | 4.16e-01 | 96.5% | 85.0% |
| 3324935 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.63 | 34.0 | 3.98e-01 | 96.5% | 73.0% |
| 3814715 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.63 | 33.0 | 3.85e-01 | 95.7% | 70.0% |
| 3616263 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.63 | 34.0 | 3.87e-01 | 95.0% | 71.0% |
| 3998221 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.62 | 34.0 | 3.41e-01 | 96.5% | 49.7% |
| 3899230 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.61 | 34.0 | 3.98e-01 | 97.2% | 76.0% |
| 3259263 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.58 | 34.0 | 3.80e-01 | 95.7% | 73.6% |
| 3880605 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.57 | 33.0 | 3.99e-01 | 97.2% | 87.8% |
| 3478549 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.55 | 33.0 | 3.67e-01 | 84.4% | 74.5% |
| 3787819 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.52 | 36.0 | 4.03e-01 | 91.5% | 93.3% |
| 5009330 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.51 | 36.0 | 3.45e-01 | 92.9% | 62.5% |
| 3817265 | 319.1.1.15 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF27746 | 0.51 | 32.0 | 3.64e-01 | 96.5% | 85.7% |