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IMGVR_UViG_3300009636_000502-3300009636-Ga0116112_100323914
Arc-VirIMGVR_UViG_3300009636_000502-3300009636-Ga0116112_100323914
Identity
- Kingdom:
- archaea
Quality
86.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-36
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lb0A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.70 | 53.0 | 3.51e-01 | 100.0% | 18.9% |
| 1r0vA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.69 | 54.0 | 4.25e-01 | 100.0% | 40.3% |
| 3gw6A03 | 3.30.2460.10 | Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain | 0.67 | 46.0 | 3.84e-01 | 80.6% | 40.4% |
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 44.0 | 2.81e-01 | 80.6% | 14.3% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 46.0 | 3.34e-01 | 100.0% | 24.5% |
| 2pmzK00 | 3.90.940.10 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega | 0.63 | 48.0 | 3.79e-01 | 100.0% | 76.8% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 45.0 | 3.27e-01 | 100.0% | 23.9% |
| 2kr7A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.62 | 46.0 | 3.98e-01 | 100.0% | 50.9% |
| 4j3cA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.62 | 47.0 | 4.01e-01 | 100.0% | 48.4% |
| 3blzA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 43.0 | 3.12e-01 | 100.0% | 24.2% |
| 4dt4A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.59 | 46.0 | 4.03e-01 | 100.0% | 54.4% |
| 6em3x01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.59 | 42.0 | 2.82e-01 | 100.0% | 17.8% |
| 1nltA02 | 2.10.230.10 | Mainly Beta › Ribbon › Chaperone, DNAj Protein; Chain A › Heat shock protein DnaJ, cysteine-rich domain | 0.59 | 41.0 | 3.38e-01 | 74.2% | 39.4% |
| 2icsA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.58 | 41.0 | 2.98e-01 | 93.5% | 21.8% |
| 2z3gB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.58 | 44.0 | 3.05e-01 | 100.0% | 23.6% |
| 1c0gA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.56 | 45.0 | 3.36e-01 | 100.0% | 39.1% |
| 5fl3A01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.56 | 40.0 | 3.06e-01 | 100.0% | 29.0% |
| 1v57A03 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 42.0 | 2.88e-01 | 96.8% | 71.5% |
| 6psyA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.56 | 41.0 | 2.58e-01 | 100.0% | 40.1% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 40.0 | 2.37e-01 | 100.0% | 38.1% |
| 2askA00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.55 | 42.0 | 3.13e-01 | 100.0% | 80.2% |
| 3e07A00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.54 | 41.0 | 2.97e-01 | 74.2% | 57.8% |
| 1bd3A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 40.0 | 2.46e-01 | 90.3% | 18.3% |
| 2la7A01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 42.0 | 2.91e-01 | 100.0% | 93.8% |
| 1vlrA01 | 3.30.200.40 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain | 0.53 | 37.0 | 2.72e-01 | 74.2% | 22.4% |
| 6ketA01 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.52 | 37.0 | 2.24e-01 | 100.0% | 22.3% |
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 36.0 | 2.57e-01 | 100.0% | 21.6% |
| 4gs5A01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.52 | 39.0 | 2.42e-01 | 96.8% | 17.6% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.52 | 40.0 | 3.25e-01 | 100.0% | 70.7% |
| 3qtgA03 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.52 | 37.0 | 2.71e-01 | 100.0% | 23.5% |
| 3g9kF01 | 3.60.20.40 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit | 0.52 | 39.0 | 2.59e-01 | 96.8% | 49.1% |
| 5adxJ01 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.52 | 38.0 | 2.96e-01 | 100.0% | 46.2% |
| 2ztbA02 | 2.60.40.4280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 2.87e-01 | 100.0% | 30.3% |
| 3mr0A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 38.0 | 2.82e-01 | 93.5% | 66.4% |
| 6pzjA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 41.0 | 2.80e-01 | 100.0% | 27.0% |
| 1zkkB00 | 2.170.270.10 | Mainly Beta › Beta Complex › Beta-clip-like › SET domain | 0.51 | 40.0 | 2.62e-01 | 100.0% | 74.5% |
| 4tzmB00 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.51 | 36.0 | 2.25e-01 | 71.0% | 67.8% |
| 5oomJ01 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.51 | 35.0 | 2.98e-01 | 71.0% | 42.4% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4948295 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.79 | 67.0 | 4.09e-01 | 100.0% | 34.2% |
| 3783976 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.74 | 57.0 | 4.16e-01 | 100.0% | 31.1% |
| 4988786 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.73 | 60.0 | 4.24e-01 | 100.0% | 56.2% |
| 3635617 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.68 | 54.0 | 5.02e-01 | 100.0% | 88.9% |
| 5043607 | 3939.1.1.386 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › Prefoldin | 0.68 | 48.0 | 3.96e-01 | 100.0% | 38.6% |
| 4978893 | 3755.3.1.632 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Prefoldin | 0.66 | 49.0 | 3.27e-01 | 100.0% | 19.3% |
| 4140340 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.65 | 48.0 | 3.17e-01 | 100.0% | 18.7% |
| 4990636 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.64 | 46.0 | 3.21e-01 | 100.0% | 21.5% |
| 3790375 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.62 | 48.0 | 3.39e-01 | 100.0% | 24.8% |
| 3985490 | 192.2.1.5 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 | 0.62 | 46.0 | 3.27e-01 | 100.0% | 24.2% |
| 3929267 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.61 | 45.0 | 3.24e-01 | 100.0% | 53.3% |
| 4250601 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.60 | 45.0 | 2.89e-01 | 87.1% | 50.6% |
| 3574069 | 604.12.1.62 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DuoxA | 0.60 | 49.0 | 3.38e-01 | 100.0% | 72.8% |
| 4441043 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.60 | 44.0 | 2.93e-01 | 87.1% | 53.8% |
| 4006301 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.59 | 46.0 | 4.06e-01 | 100.0% | 56.4% |
| 3715197 | 109.4.1.222 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DCB | 0.58 | 43.0 | 2.77e-01 | 100.0% | 14.6% |
| 4263412 | 620.1.1.2 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB | 0.58 | 42.0 | 2.91e-01 | 100.0% | 44.5% |
| 4976267 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 40.0 | 2.44e-01 | 100.0% | 11.0% |
| 3998938 | 6110.1.1.1 ↗ | alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 | 0.54 | 42.0 | 2.35e-01 | 100.0% | 17.3% |
| 4942905 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.54 | 39.0 | 3.56e-01 | 71.0% | 48.9% |
| 5047447 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 40.0 | 2.88e-01 | 100.0% | 55.0% |
| 3361337 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.53 | 37.0 | 3.57e-01 | 74.2% | 48.7% |
| 3716174 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.52 | 41.0 | 2.94e-01 | 100.0% | 25.5% |
| 3691719 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.52 | 39.0 | 2.91e-01 | 100.0% | 55.2% |
| 5031039 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.51 | 36.0 | 3.36e-01 | 71.0% | 75.6% |
| 4937554 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.50 | 36.0 | 3.44e-01 | 71.0% | 56.4% |