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IMGVR_UViG_3300009640_000037-3300009640-Ga0116126_100388111

Arc-Vir

IMGVR_UViG_3300009640_000037-3300009640-Ga0116126_100388111

Quality

84.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 52-162
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18909.6 best dGTP_diPhyd_N 32.4 1.10e-07 64.0% 72.7%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bhaA00 1.10.287.170 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 33.0 4.21e-01 76.6% 82.1%
5ux1D00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 43.0 3.50e-01 71.2% 73.6%
1n5uA05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.60 33.0 3.33e-01 73.0% 50.9%
8d7hD01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.59 41.0 3.50e-01 70.3% 69.4%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.57 37.0 3.88e-01 82.0% 72.0%
3ezxA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.57 36.0 4.06e-01 80.2% 82.6%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 36.0 3.58e-01 70.3% 60.7%
2vvwA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.55 37.0 3.35e-01 78.4% 50.7%
3u5nA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 37.0 3.65e-01 70.3% 85.0%
2pftA00 1.20.1280.170 Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 0.53 45.0 2.88e-01 90.1% 23.7%
2ckoA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.52 42.0 3.11e-01 85.6% 69.0%
1eqfA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.51 36.0 3.50e-01 72.1% 76.0%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 36.0 3.61e-01 73.0% 77.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3962012 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.68 42.0 4.56e-01 71.2% 73.7%
3459313 616.1.1.1 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 0.67 40.0 4.43e-01 71.2% 74.4%
3957445 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.61 49.0 4.88e-01 95.5% 81.7%
3251734 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.61 49.0 3.92e-01 86.5% 77.3%
5000681 218.2.1.1 a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.60 39.0 3.49e-01 72.1% 47.7%
2649515 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.59 48.0 4.01e-01 86.5% 81.7%
3977166 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.59 47.0 3.76e-01 86.5% 82.2%
3689677 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.58 42.0 3.92e-01 74.8% 78.5%
4021501 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 44.0 2.92e-01 78.4% 39.0%
3175629 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 44.0 2.68e-01 82.0% 17.5%
3303386 5050.1.1.15 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nodulin-like 0.57 48.0 3.73e-01 91.9% 84.1%
3499338 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.57 45.0 3.74e-01 84.7% 75.4%
3417088 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.57 46.0 3.67e-01 86.5% 77.2%
4972316 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.56 46.0 3.84e-01 87.4% 80.0%
3699339 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.55 44.0 3.77e-01 87.4% 86.5%
4243441 109.4.1.309 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med12 0.54 42.0 2.46e-01 81.1% 48.7%
4994581 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.54 44.0 3.71e-01 89.2% 84.7%
3980513 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.53 47.0 3.98e-01 97.3% 63.3%
3801859 109.4.1.1242 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_RRP12_N 0.52 45.0 3.49e-01 95.5% 60.0%
3714062 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 42.0 2.71e-01 91.0% 46.9%
5060868 140.1.1.9 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_3 0.51 45.0 3.87e-01 98.2% 62.4%
4479551 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.50 37.0 4.07e-01 85.6% 95.6%
4985999 4994.1.1.0 alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like 0.50 34.0 3.91e-01 81.1% 98.8%
D2 high residues 172-299
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14528.12 best LAGLIDADG_3 26.0 1.20e-05 50.0% 51.2%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5a72A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.86 83.0 7.60e-01 100.0% 80.9%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.86 83.0 7.53e-01 100.0% 81.4%
3e54A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.83 79.0 7.23e-01 100.0% 83.0%
4z1xA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.83 78.0 7.52e-01 100.0% 90.9%
4yhxA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.82 77.0 7.48e-01 99.2% 92.2%
4efjA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.81 76.0 7.35e-01 99.2% 93.6%
2ex5A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.80 76.0 6.33e-01 100.0% 66.7%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.79 58.0 6.15e-01 81.2% 84.2%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.78 69.0 6.95e-01 98.4% 93.0%
2ab5A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.76 60.0 5.95e-01 82.0% 80.6%
2dchX01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.76 46.0 5.37e-01 100.0% 83.9%
3c0wA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.65 45.0 4.65e-01 99.2% 75.8%
2if1A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.54 36.0 3.63e-01 88.3% 68.3%
2x1wL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 4.06e-01 71.9% 97.1%
2ogkD00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.53 40.0 3.89e-01 80.5% 95.1%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.52 39.0 3.85e-01 78.9% 92.0%
2w40A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 43.0 3.46e-01 93.0% 87.4%
4i43B02 3.30.43.40 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain 0.50 32.0 3.42e-01 95.3% 71.9%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2411782 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.85 81.0 7.66e-01 100.0% 91.2%
4412539 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.84 62.0 5.49e-01 75.8% 55.4%
1790209 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.84 77.0 7.39e-01 99.2% 86.0%
4506564 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.84 77.0 7.60e-01 100.0% 91.9%
5012702 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.84 64.0 6.74e-01 78.1% 89.6%
3282322 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.84 63.0 6.64e-01 78.1% 86.1%
169883 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.83 79.0 7.23e-01 100.0% 83.0%
5028314 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.83 58.0 6.37e-01 76.6% 86.7%
4464001 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.82 63.0 6.70e-01 81.2% 88.7%
4937024 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.82 50.0 5.99e-01 71.1% 87.8%
4934172 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.82 45.0 6.08e-01 78.1% 100.0%
4997781 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.81 56.0 6.12e-01 74.2% 84.8%
5030027 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.81 62.0 6.24e-01 78.9% 79.2%
5023791 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.81 58.0 6.28e-01 75.0% 85.5%
5031636 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.81 59.0 6.15e-01 75.0% 86.7%
4961351 242.1.1.10 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › PF26411 0.81 59.0 6.33e-01 74.2% 91.8%
4479273 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.81 75.0 7.50e-01 97.7% 97.7%
5028136 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.81 61.0 6.47e-01 93.8% 87.0%
3178011 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.81 76.0 7.33e-01 99.2% 92.9%
5028488 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.81 59.0 6.47e-01 77.3% 91.4%
4653164 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.81 75.0 7.36e-01 98.4% 100.0%
3249652 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.80 75.0 7.41e-01 100.0% 97.8%
4937054 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.80 55.0 6.07e-01 74.2% 85.7%
5029357 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.80 59.0 6.21e-01 81.2% 84.3%
4933638 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.80 61.0 5.91e-01 89.1% 72.1%
4971295 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.79 54.0 6.26e-01 71.9% 94.7%
3178012 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.79 57.0 6.33e-01 76.6% 91.4%
3602142 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.78 55.0 6.08e-01 76.6% 88.6%
286927 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.77 70.0 6.88e-01 100.0% 90.3%
4999898 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.76 51.0 5.99e-01 100.0% 96.7%
5046394 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.76 50.0 5.90e-01 100.0% 95.6%
3602169 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.75 46.0 5.63e-01 99.2% 94.1%
4999899 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.74 62.0 6.34e-01 89.1% 89.6%
5072185 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.74 48.0 5.56e-01 100.0% 89.5%
4997777 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.73 46.0 5.55e-01 100.0% 95.3%
4998931 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.72 67.0 6.03e-01 99.2% 81.1%
4993850 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.69 48.0 5.42e-01 100.0% 94.7%
5028135 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.69 48.0 5.07e-01 100.0% 79.1%
4945568 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.67 52.0 4.96e-01 100.0% 70.3%
3950275 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.66 43.0 5.08e-01 100.0% 100.0%
5030848 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.63 49.0 4.74e-01 100.0% 71.7%
3969285 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.61 36.0 4.32e-01 81.2% 87.1%
4954449 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.58 39.0 4.30e-01 82.0% 86.9%
5060043 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.58 34.0 4.23e-01 89.8% 95.0%
5033257 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.57 32.0 4.05e-01 89.1% 93.3%
3593859 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.54 37.0 4.05e-01 96.1% 85.7%
5013605 304.165.1.0 a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 0.54 41.0 3.96e-01 100.0% 70.3%
4999334 304.165.1.4 a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 › HVO_2525_N 0.52 35.0 3.55e-01 100.0% 68.8%
5009717 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 39.0 3.84e-01 100.0% 72.1%
4980724 304.165.1.4 a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 › HVO_2525_N 0.52 39.0 3.80e-01 100.0% 70.3%
3590472 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.51 30.0 3.73e-01 85.9% 97.3%