←Back to structures

IMGVR_UViG_3300009642_000007-3300009642-Ga0123331_100023634

Arc-Vir

IMGVR_UViG_3300009642_000007-3300009642-Ga0123331_100023634

Identity

Kingdom:
archaea

Quality

89.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-76
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 36.0 4.30e-01 88.0% 68.6%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 36.0 4.26e-01 89.3% 86.5%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 38.0 4.35e-01 85.3% 86.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 37.0 4.01e-01 90.7% 76.2%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 37.0 3.88e-01 98.7% 70.1%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.58 35.0 3.50e-01 98.7% 56.2%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 4.01e-01 93.3% 66.7%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.54 38.0 4.04e-01 85.3% 82.1%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 39.0 3.25e-01 80.0% 95.7%
3u6yA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.52 38.0 3.54e-01 100.0% 60.6%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.51 41.0 3.32e-01 86.7% 64.8%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.51 38.0 2.96e-01 81.3% 87.6%
4rm7A02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.50 42.0 3.78e-01 94.7% 79.8%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 39.0 3.31e-01 86.7% 85.1%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4282868 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 43.0 4.48e-01 88.0% 58.6%
3926179 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 39.0 4.21e-01 88.0% 56.9%
3935101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 41.0 4.34e-01 82.7% 61.5%
3581611 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 38.0 4.52e-01 85.3% 80.0%
3743110 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.65 46.0 4.11e-01 89.3% 53.3%
5080835 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 41.0 4.69e-01 100.0% 89.1%
2464202 295.1.1.1 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.63 38.0 3.70e-01 98.7% 54.2%
5065152 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.61 51.0 3.38e-01 100.0% 22.3%
4965524 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 40.0 4.48e-01 100.0% 90.9%
5044748 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 44.0 3.99e-01 93.3% 56.2%
5065528 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.60 38.0 3.91e-01 100.0% 68.6%
119302 3146.1.1.0 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain 0.59 42.0 2.84e-01 78.7% 90.7%
5078789 4333.1.1.8 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › N6_Mtase 0.58 51.0 3.03e-01 100.0% 12.4%
3511485 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.58 41.0 3.50e-01 74.7% 61.7%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.57 35.0 3.64e-01 88.0% 67.1%
3227986 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 46.0 4.56e-01 100.0% 85.0%
3877198 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.54 41.0 3.76e-01 97.3% 61.0%
3253321 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 41.0 4.38e-01 100.0% 93.8%
4262943 220.1.1.184 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP 0.54 45.0 3.82e-01 93.3% 63.2%
3218993 4052.1.1.0 ↗ beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like 0.53 44.0 3.98e-01 100.0% 67.0%
4027309 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.53 37.0 3.51e-01 96.0% 60.0%
3898198 220.1.1.184 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP 0.53 44.0 3.75e-01 93.3% 64.8%
4972556 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 3.71e-01 93.3% 70.6%
3698212 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 37.0 2.44e-01 78.7% 34.3%
3998297 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 29.0 2.40e-01 77.3% 26.7%
3986515 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.50 39.0 2.66e-01 81.3% 59.7%