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IMGVR_UViG_3300009642_000007-3300009642-Ga0123331_100023678

Arc-Vir

IMGVR_UViG_3300009642_000007-3300009642-Ga0123331_100023678

Identity

Kingdom:
archaea

Quality

88.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-168
PDB
Domain cluster: rep: MH590603.1__AXH70546.1__SEA_DAREDEVIL_160__00160__D3-111_176-218
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 26.0 3.54e-01 72.1% 77.8%
3imoC00 3.30.920.70 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.57 30.0 3.65e-01 86.1% 77.6%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.55 29.0 3.27e-01 73.3% 64.1%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 23.0 3.25e-01 70.9% 83.1%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.51 27.0 3.42e-01 76.4% 88.9%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5019886 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.64 29.0 4.09e-01 71.5% 90.7%
D2 medium residues 169-200_254-310
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4o4bB00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.54 38.0 2.85e-01 75.3% 77.6%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 27.0 3.48e-01 89.9% 90.0%
3ia8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 36.0 3.03e-01 74.2% 90.7%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 36.0 3.03e-01 74.2% 92.5%
2jjdF02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 40.0 2.92e-01 87.6% 74.8%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3555343 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.51 36.0 2.92e-01 75.3% 47.6%
D3 medium residues 201-253
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.71 59.0 5.07e-01 98.1% 78.3%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 46.0 3.96e-01 100.0% 45.3%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.64 50.0 5.14e-01 94.3% 96.0%
4qclA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 44.0 3.58e-01 81.1% 60.4%
2bopA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 45.0 3.88e-01 79.2% 55.3%
3cc1A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 42.0 3.70e-01 96.2% 46.6%
5eo9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 3.94e-01 98.1% 80.0%
3klqA01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 45.0 3.63e-01 98.1% 41.2%
3bc9A01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 43.0 3.70e-01 94.3% 48.4%
6jbvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 2.99e-01 75.5% 71.4%
2xy1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 4.00e-01 100.0% 60.8%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.56 45.0 3.81e-01 98.1% 91.2%
6edhA00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.56 39.0 2.49e-01 71.7% 38.4%
1bu6O01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 45.0 2.94e-01 90.6% 37.8%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 3.95e-01 98.1% 59.1%
2iciA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 43.0 3.29e-01 92.5% 74.5%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.54 43.0 4.09e-01 98.1% 75.8%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.54 47.0 4.30e-01 100.0% 91.5%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 3.77e-01 100.0% 59.6%
5unhA02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 44.0 2.85e-01 96.2% 64.0%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.54 44.0 3.94e-01 96.2% 100.0%
2yuxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.63e-01 100.0% 75.9%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.52 42.0 3.63e-01 100.0% 65.6%
4dipH00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 40.0 3.27e-01 92.5% 68.1%
2x3lB03 3.90.105.10 Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › Molybdopterin biosynthesis moea protein, domain 2 0.51 39.0 3.77e-01 81.1% 81.4%
3vz3A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 43.0 2.75e-01 96.2% 54.4%
2pjyC00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.51 40.0 3.61e-01 92.5% 91.1%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.50 41.0 3.46e-01 100.0% 97.1%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4289160 3397.1.1.1 ↗ a+b complex topology › Tic22 › Tic22 › Tic22 › Tic22 0.83 75.0 6.37e-01 100.0% 67.1%
77927 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.71 59.0 5.01e-01 98.1% 76.6%
5047147 304.19.1.0 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain 0.66 57.0 4.59e-01 98.1% 96.2%
3575366 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.64 50.0 4.22e-01 100.0% 49.5%
4064225 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.64 52.0 3.88e-01 96.2% 46.5%
4945577 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.63 52.0 4.94e-01 96.2% 89.2%
5003527 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.63 52.0 3.87e-01 96.2% 47.3%
4967732 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.62 50.0 3.78e-01 96.2% 48.6%
5020151 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.62 50.0 3.87e-01 96.2% 53.3%
5015865 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.62 50.0 3.85e-01 96.2% 51.4%
3601494 210.2.1.0 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain 0.62 42.0 2.62e-01 71.7% 94.5%
5080205 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.61 47.0 4.85e-01 96.2% 96.0%
4935672 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.61 51.0 3.78e-01 94.3% 50.0%
4614122 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.61 49.0 3.57e-01 96.2% 42.4%
4927377 304.5.1.1 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II 0.60 48.0 3.89e-01 94.3% 88.6%
4105434 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.60 49.0 3.64e-01 96.2% 33.1%
4637265 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.59 48.0 3.62e-01 96.2% 47.3%
5045774 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.59 49.0 3.68e-01 94.3% 51.4%
4954188 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.59 48.0 3.58e-01 92.5% 32.9%
5047755 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.59 49.0 3.66e-01 94.3% 51.4%
4930766 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.59 48.0 3.70e-01 96.2% 52.6%
4203413 109.3.1.218 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_KRIT1 0.58 47.0 3.11e-01 100.0% 20.4%
4004207 11.1.4.76 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO_5th 0.58 40.0 3.63e-01 96.2% 50.0%
4946583 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.58 46.0 3.84e-01 100.0% 55.7%
3963369 4222.1.1.2 ↗ a+b two layers › ImmE5-like › ImmE5-like › ImmE5-like › Imm40 0.57 45.0 3.80e-01 88.7% 58.9%
3467170 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.57 46.0 4.40e-01 92.5% 79.4%
3992138 11.2.1.52 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem 0.57 46.0 3.44e-01 96.2% 100.0%
3584130 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 48.0 3.68e-01 100.0% 49.6%
4236834 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.56 44.0 3.98e-01 98.1% 62.4%
5030770 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.54 42.0 3.71e-01 96.2% 60.0%
5052987 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 3.63e-01 98.1% 49.1%
5027350 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.53 43.0 3.33e-01 96.2% 37.0%
3958897 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.53 43.0 3.37e-01 98.1% 40.8%
5014684 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.53 40.0 3.97e-01 92.5% 84.5%
4406921 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 36.0 3.08e-01 71.7% 83.5%
3935404 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.51 40.0 3.52e-01 98.1% 55.6%
3513198 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 36.0 3.37e-01 81.1% 76.0%
3414928 382.1.1.6 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR 0.51 41.0 3.64e-01 100.0% 97.7%
4968580 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 41.0 3.96e-01 100.0% 86.2%