←Back to structures
IMGVR_UViG_3300009645_000049-3300009645-Ga0116106_100119110
Arc-VirIMGVR_UViG_3300009645_000049-3300009645-Ga0116106_100119110
Identity
- Kingdom:
- archaea
Quality
68.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-128
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.74 | 26.0 | 4.35e-01 | 92.1% | 91.1% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.73 | 27.0 | 3.26e-01 | 92.9% | 48.9% |
| 1vp7A00 | 1.10.287.1040 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit | 0.70 | 28.0 | 3.79e-01 | 85.7% | 69.1% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.68 | 30.0 | 3.60e-01 | 100.0% | 60.0% |
| 1a62A01 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.64 | 23.0 | 3.59e-01 | 72.2% | 84.8% |
| 2qsbA00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.63 | 41.0 | 4.88e-01 | 87.3% | 96.5% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.59 | 28.0 | 3.88e-01 | 88.9% | 94.9% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.58 | 43.0 | 4.56e-01 | 92.1% | 89.8% |
| 5mq1A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.55 | 43.0 | 4.56e-01 | 100.0% | 95.4% |
| 4py6C00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.55 | 46.0 | 4.69e-01 | 100.0% | 90.6% |
| 5fgoA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 28.0 | 3.72e-01 | 73.8% | 96.8% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.53 | 26.0 | 3.77e-01 | 94.4% | 100.0% |
| 3hmfA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.53 | 42.0 | 4.42e-01 | 96.0% | 94.8% |
| 6hj2A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.51 | 42.0 | 3.30e-01 | 88.9% | 79.9% |
| 2pcsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 43.0 | 4.07e-01 | 92.9% | 99.3% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 42.0 | 3.95e-01 | 87.3% | 74.7% |
| 1qftB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 42.0 | 3.84e-01 | 90.5% | 94.1% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3880178 | 192.8.1.92 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CUPID | 0.73 | 29.0 | 3.65e-01 | 94.4% | 58.7% |
| 5069358 | 633.12.1.0 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like | 0.66 | 42.0 | 5.07e-01 | 91.3% | 100.0% |
| 3585791 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.65 | 27.0 | 3.53e-01 | 93.7% | 66.7% |
| 4189563 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.65 | 43.0 | 4.97e-01 | 88.9% | 94.4% |
| 4937394 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.64 | 40.0 | 4.95e-01 | 88.1% | 100.0% |
| 5068709 | 633.12.1.0 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like | 0.64 | 43.0 | 4.97e-01 | 90.5% | 96.6% |
| 5054723 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.63 | 40.0 | 4.74e-01 | 87.3% | 95.2% |
| 5001354 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.63 | 42.0 | 4.86e-01 | 88.1% | 96.6% |
| 5055634 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.61 | 39.0 | 4.71e-01 | 86.5% | 100.0% |
| 4932900 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.61 | 42.0 | 4.83e-01 | 90.5% | 96.8% |
| 4956583 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.61 | 42.0 | 4.70e-01 | 90.5% | 94.7% |
| 4820874 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 40.0 | 4.18e-01 | 73.8% | 75.9% |
| 3407072 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.57 | 33.0 | 4.11e-01 | 74.6% | 91.3% |
| 3527051 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.57 | 32.0 | 3.72e-01 | 73.8% | 75.8% |
| 3597397 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.56 | 50.0 | 4.23e-01 | 99.2% | 72.9% |
| 1738597 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.55 | 29.0 | 3.69e-01 | 74.6% | 87.7% |
| 1723253 | 7575.1.1.6 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C80 | 0.54 | 39.0 | 3.04e-01 | 77.8% | 48.7% |
| 3248840 | 150.1.1.8 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF2383 | 0.52 | 46.0 | 4.31e-01 | 97.6% | 78.7% |
| 3505507 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.52 | 29.0 | 3.68e-01 | 77.8% | 95.7% |
| 3221760 | 604.1.1.140 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF27005 | 0.52 | 28.0 | 3.45e-01 | 91.3% | 80.0% |
| 3168103 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.52 | 30.0 | 3.48e-01 | 79.4% | 76.8% |
| 3478793 | 133.1.1.0 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) | 0.52 | 44.0 | 3.72e-01 | 90.5% | 60.0% |
| 3599909 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 42.0 | 4.48e-01 | 88.1% | 100.0% |
| 3244254 | 101.1.8.23 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF4473 | 0.51 | 32.0 | 3.81e-01 | 85.7% | 97.5% |
| 3768060 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.51 | 40.0 | 3.28e-01 | 86.5% | 58.8% |
| 3782816 | 3939.1.1.208 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › APG6 | 0.51 | 41.0 | 3.30e-01 | 88.9% | 49.4% |
| 2491389 | 5.1.3.19 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira | 0.50 | 37.0 | 3.24e-01 | 76.2% | 65.4% |
| 4406596 | 210.1.1.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › IMP_cyclohyd | 0.50 | 38.0 | 3.31e-01 | 82.5% | 85.6% |