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IMGVR_UViG_3300009646_000230-3300009646-Ga0116132_10062735
Arc-VirIMGVR_UViG_3300009646_000230-3300009646-Ga0116132_10062735
Identity
- Kingdom:
- archaea
Quality
84.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 39-102
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.86 | 73.0 | 6.89e-01 | 92.2% | 81.3% |
| 5mmjo00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.85 | 65.0 | 6.16e-01 | 81.2% | 72.0% |
| 7tj9A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.83 | 67.0 | 5.54e-01 | 90.6% | 51.9% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.80 | 68.0 | 6.34e-01 | 93.8% | 78.5% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.79 | 68.0 | 6.04e-01 | 93.8% | 66.7% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.79 | 54.0 | 5.87e-01 | 76.6% | 90.2% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.79 | 56.0 | 4.21e-01 | 75.0% | 38.8% |
| 4rm7A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.78 | 63.0 | 4.89e-01 | 89.1% | 45.3% |
| 6r1nA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.77 | 62.0 | 5.23e-01 | 85.9% | 55.3% |
| 3fxdC00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.77 | 55.0 | 6.18e-01 | 75.0% | 96.0% |
| 4b3fX01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 60.0 | 3.76e-01 | 84.4% | 16.6% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 65.0 | 5.64e-01 | 96.9% | 62.7% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 55.0 | 5.07e-01 | 79.7% | 60.5% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.75 | 62.0 | 4.65e-01 | 90.6% | 38.2% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 56.0 | 5.34e-01 | 93.8% | 68.9% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.75 | 64.0 | 5.36e-01 | 96.9% | 57.1% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 62.0 | 5.85e-01 | 95.3% | 75.6% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.74 | 56.0 | 5.73e-01 | 82.8% | 85.2% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 59.0 | 5.92e-01 | 92.2% | 86.2% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.73 | 53.0 | 4.90e-01 | 76.6% | 62.0% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.72 | 58.0 | 4.10e-01 | 100.0% | 30.1% |
| 6f1eA01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.72 | 52.0 | 3.99e-01 | 76.6% | 41.7% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 55.0 | 4.91e-01 | 85.9% | 59.3% |
| 4mhlA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.71 | 55.0 | 4.16e-01 | 85.9% | 60.2% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 59.0 | 5.66e-01 | 98.4% | 85.5% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 56.0 | 4.99e-01 | 95.3% | 64.2% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.66 | 45.0 | 4.05e-01 | 71.9% | 52.2% |
| 3plnA03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 48.0 | 3.71e-01 | 90.6% | 69.5% |
| 2ckoA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.58 | 49.0 | 3.29e-01 | 96.9% | 48.5% |
| 4bpxD00 | 1.20.930.80 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.57 | 50.0 | 3.44e-01 | 96.9% | 88.7% |
| 1vibA00 | 1.10.287.120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Neurotoxin B-IV-like | 0.54 | 36.0 | 3.80e-01 | 71.9% | 85.5% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3460130 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.91 | 68.0 | 6.21e-01 | 78.1% | 63.7% |
| 3595968 | 605.2.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 | 0.89 | 71.0 | 6.54e-01 | 84.4% | 76.2% |
| 3834487 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.89 | 68.0 | 3.85e-01 | 84.4% | 8.4% |
| 3412019 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.88 | 69.0 | 6.05e-01 | 82.8% | 58.9% |
| 3596744 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.88 | 76.0 | 6.87e-01 | 100.0% | 70.6% |
| 5017743 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.87 | 70.0 | 6.30e-01 | 85.9% | 72.9% |
| 3502968 | 3684.1.1.23 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › CA109-like | 0.86 | 77.0 | 5.30e-01 | 96.9% | 33.8% |
| 3629808 | 3291.1.1.130 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CHDCT2 | 0.84 | 71.0 | 6.29e-01 | 93.8% | 64.4% |
| 3693906 | 192.22.1.5 ↗ | alpha bundles › Long alpha-hairpin › Ral binding domain of RLIP76 › Ral binding domain of RLIP76 › Tho2 | 0.83 | 75.0 | 6.56e-01 | 100.0% | 80.0% |
| 3287947 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.83 | 72.0 | 6.33e-01 | 95.3% | 66.7% |
| 3598168 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.83 | 74.0 | 5.39e-01 | 98.4% | 38.8% |
| 3389690 | 174.1.1.29 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4728 | 0.83 | 74.0 | 5.78e-01 | 100.0% | 66.7% |
| 4396574 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.82 | 73.0 | 5.35e-01 | 98.4% | 82.9% |
| 3722750 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.82 | 74.0 | 4.67e-01 | 100.0% | 43.4% |
| 4106620 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.82 | 68.0 | 6.45e-01 | 90.6% | 77.3% |
| 4000037 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.81 | 66.0 | 6.80e-01 | 87.5% | 93.3% |
| 3184698 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.81 | 70.0 | 6.28e-01 | 96.9% | 71.1% |
| 3595675 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.80 | 71.0 | 4.79e-01 | 96.9% | 59.1% |
| 5006770 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.80 | 71.0 | 5.25e-01 | 98.4% | 40.6% |
| 3435097 | 4177.1.1.11 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › DUF632 | 0.80 | 70.0 | 4.60e-01 | 98.4% | 23.8% |
| 3588291 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.80 | 62.0 | 5.72e-01 | 82.8% | 66.3% |
| 3927738 | 632.8.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 | 0.79 | 67.0 | 5.90e-01 | 95.3% | 63.2% |
| 3770414 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.79 | 71.0 | 6.00e-01 | 100.0% | 97.1% |
| 3283001 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.79 | 68.0 | 5.92e-01 | 95.3% | 64.2% |
| 3769667 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.78 | 69.0 | 5.79e-01 | 100.0% | 59.0% |
| 4667859 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.77 | 67.0 | 5.54e-01 | 96.9% | 57.4% |
| 4091932 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.77 | 70.0 | 5.43e-01 | 100.0% | 94.1% |
| 3938635 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.77 | 67.0 | 5.05e-01 | 98.4% | 76.1% |
| 3732397 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.77 | 66.0 | 5.38e-01 | 96.9% | 57.5% |
| 3386700 | 304.58.1.0 ↗ | a+b two layers › Alpha-beta plaits › FepE-like › FepE-like | 0.77 | 67.0 | 4.22e-01 | 93.8% | 38.6% |
| 3821144 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.76 | 65.0 | 3.73e-01 | 96.9% | 10.0% |
| 3357448 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.75 | 55.0 | 6.03e-01 | 78.1% | 100.0% |
| 3793286 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.75 | 66.0 | 4.69e-01 | 100.0% | 34.5% |
| 3500901 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.75 | 66.0 | 4.71e-01 | 100.0% | 36.3% |
| 3456370 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.73 | 62.0 | 4.77e-01 | 98.4% | 42.6% |
| 3254670 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.71 | 60.0 | 4.21e-01 | 98.4% | 60.0% |
| 3526105 | 604.3.1.18 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › PF27519 | 0.70 | 61.0 | 5.49e-01 | 98.4% | 80.0% |
| 3236195 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.70 | 61.0 | 4.48e-01 | 100.0% | 70.3% |
| 3420479 | 5073.1.2.13 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain › Cation_ATPase_C, Cation_ATPase_N | 0.69 | 56.0 | 3.82e-01 | 96.9% | 23.5% |
| 3380124 | 109.4.1.1266 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB | 0.66 | 53.0 | 3.35e-01 | 90.6% | 15.9% |