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IMGVR_UViG_3300009647_000327-3300009647-Ga0123326_10058842
Arc-VirIMGVR_UViG_3300009647_000327-3300009647-Ga0123326_10058842
Identity
- Kingdom:
- archaea
Quality
86.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-53
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20586.4 best | DUF6788 | 59.5 | 3.70e-16 | 100.0% | 62.3% |
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.78 | 50.0 | 4.32e-01 | 100.0% | 42.9% |
| 4c23B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.76 | 49.0 | 3.08e-01 | 94.0% | 14.1% |
| 4bf3A00 | 2.30.31.50 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F | 0.72 | 47.0 | 3.46e-01 | 90.0% | 25.6% |
| 1sz2A02 | 3.40.367.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › | 0.69 | 41.0 | 2.74e-01 | 90.0% | 15.0% |
| 1qyaB01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.68 | 42.0 | 3.05e-01 | 90.0% | 21.5% |
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.64 | 54.0 | 3.67e-01 | 96.0% | 96.7% |
| 4oddA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 37.0 | 2.71e-01 | 100.0% | 20.8% |
| 2ltjA00 | 2.20.230.10 | Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. | 0.58 | 49.0 | 3.83e-01 | 96.0% | 55.0% |
| 3sluA02 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 47.0 | 3.47e-01 | 94.0% | 53.3% |
| 7xoiD01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.56 | 39.0 | 3.03e-01 | 90.0% | 33.6% |
| 6mzoA01 | 3.40.50.11970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 51.0 | 3.73e-01 | 100.0% | 50.8% |
| 8ainB01 | 3.10.450.250 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor | 0.56 | 46.0 | 3.64e-01 | 92.0% | 44.8% |
| 4dimA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 47.0 | 3.07e-01 | 94.0% | 40.2% |
| 2ci8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 50.0 | 4.79e-01 | 100.0% | 91.1% |
| 1wibA00 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.54 | 44.0 | 3.65e-01 | 92.0% | 71.7% |
| 4fe9A03 | 2.60.40.3620 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 45.0 | 3.62e-01 | 100.0% | 74.5% |
| 4clfA02 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.54 | 40.0 | 2.90e-01 | 90.0% | 67.4% |
| 4cllA01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.53 | 40.0 | 2.81e-01 | 92.0% | 61.0% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 43.0 | 3.56e-01 | 96.0% | 64.4% |
| 7mwzD01 | 3.40.50.12100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein | 0.53 | 44.0 | 3.06e-01 | 100.0% | 26.7% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.53 | 42.0 | 2.67e-01 | 100.0% | 17.3% |
| 2pn1A03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 41.0 | 3.26e-01 | 92.0% | 65.0% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.53 | 35.0 | 2.74e-01 | 100.0% | 30.0% |
| 4lgvD02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 36.0 | 2.31e-01 | 72.0% | 48.3% |
| 2qrdB01 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 34.0 | 3.61e-01 | 98.0% | 89.2% |
| 1n7oA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.51 | 40.0 | 3.41e-01 | 100.0% | 51.8% |
| 4ntqB00 | 3.30.2450.20 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.51 | 40.0 | 2.94e-01 | 90.0% | 37.2% |
| 2a22B00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.51 | 46.0 | 3.00e-01 | 100.0% | 90.1% |
| 1yfbA00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.50 | 32.0 | 3.23e-01 | 74.0% | 61.5% |
| 1o9aA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.50 | 32.0 | 3.34e-01 | 100.0% | 72.7% |
| 2v8qB00 | 6.20.250.60 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.50 | 32.0 | 2.93e-01 | 90.0% | 43.8% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4680387 | 1.1.10.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) | 0.81 | 50.0 | 4.27e-01 | 100.0% | 40.0% |
| 3260099 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 46.0 | 3.76e-01 | 94.0% | 34.4% |
| 5041097 | 6043.1.1.0 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like | 0.71 | 52.0 | 5.05e-01 | 92.0% | 70.9% |
| 4076804 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.70 | 46.0 | 4.48e-01 | 92.0% | 61.8% |
| 1118504 | 286.1.1.4 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase | 0.63 | 41.0 | 2.94e-01 | 98.0% | 21.1% |
| 4650440 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.62 | 46.0 | 2.78e-01 | 100.0% | 11.1% |
| 4956065 | 2.26.1.1 ↗ | beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 | 0.62 | 49.0 | 3.91e-01 | 88.0% | 100.0% |
| 3593795 | 3781.1.1.0 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain | 0.60 | 51.0 | 4.39e-01 | 92.0% | 88.0% |
| 5077838 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.60 | 49.0 | 3.53e-01 | 100.0% | 32.9% |
| 4546371 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.60 | 50.0 | 3.84e-01 | 96.0% | 45.0% |
| 5052858 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.59 | 48.0 | 3.06e-01 | 96.0% | 95.8% |
| 3645007 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.58 | 41.0 | 3.52e-01 | 100.0% | 44.7% |
| 3580295 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.58 | 51.0 | 3.51e-01 | 100.0% | 70.4% |
| 4025093 | 6127.1.1.1 ↗ | beta meanders › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › CIDR1_gamma | 0.58 | 49.0 | 3.93e-01 | 94.0% | 56.0% |
| 3604446 | 2004.1.1.480 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 | 0.58 | 43.0 | 2.45e-01 | 82.0% | 95.7% |
| 3967986 | 4.7.1.2 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF | 0.58 | 51.0 | 4.39e-01 | 100.0% | 71.2% |
| 5027264 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.58 | 36.0 | 3.19e-01 | 74.0% | 45.7% |
| 3492377 | 220.1.1.18 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PTB | 0.58 | 51.0 | 3.62e-01 | 98.0% | 45.5% |
| 2556671 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.57 | 44.0 | 4.17e-01 | 90.0% | 68.9% |
| 3799822 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.57 | 34.0 | 3.69e-01 | 78.0% | 70.0% |
| 3793090 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.57 | 50.0 | 2.98e-01 | 100.0% | 31.5% |
| 4951499 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.57 | 48.0 | 4.26e-01 | 98.0% | 64.0% |
| 3191716 | 2496.1.1.1 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › CRAL_TRIO | 0.57 | 48.0 | 3.10e-01 | 100.0% | 72.6% |
| 4932525 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.57 | 43.0 | 2.77e-01 | 86.0% | 96.3% |
| 4960060 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.57 | 38.0 | 2.73e-01 | 88.0% | 21.9% |
| 4027702 | 6127.1.1.1 ↗ | beta meanders › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › CIDR1_gamma | 0.56 | 47.0 | 4.20e-01 | 92.0% | 78.6% |
| 3496244 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 41.0 | 3.20e-01 | 90.0% | 31.4% |
| 5079669 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.56 | 36.0 | 3.55e-01 | 78.0% | 60.0% |
| 5022273 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 46.0 | 4.20e-01 | 88.0% | 93.8% |
| 3592221 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 43.0 | 3.40e-01 | 90.0% | 44.1% |
| 4023312 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 45.0 | 3.43e-01 | 92.0% | 40.0% |
| 3651019 | 5.1.4.101 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 | 0.56 | 44.0 | 2.86e-01 | 100.0% | 16.7% |
| 3672217 | 896.1.1.2 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 | 0.56 | 45.0 | 3.64e-01 | 92.0% | 59.0% |
| 3289254 | 220.1.1.82 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 | 0.55 | 46.0 | 3.70e-01 | 92.0% | 61.1% |
| 3499134 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.55 | 50.0 | 3.53e-01 | 100.0% | 67.1% |
| 4317378 | 325.1.6.4 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PS_Dcarbxylase | 0.54 | 42.0 | 2.79e-01 | 92.0% | 23.3% |
| 2905 | 3781.1.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N | 0.54 | 44.0 | 3.65e-01 | 92.0% | 71.7% |
| 4002697 | 5090.2.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Immune inhibitor A metallopeptidase C-terminal domain › Immune inhibitor A metallopeptidase C-terminal domain | 0.54 | 46.0 | 3.25e-01 | 100.0% | 32.9% |
| 4016439 | 4086.1.1.1 ↗ | a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI | 0.53 | 34.0 | 2.71e-01 | 90.0% | 30.5% |
| 3515600 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 42.0 | 3.91e-01 | 90.0% | 90.8% |
| 1122902 | 375.1.4.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C | 0.53 | 41.0 | 4.01e-01 | 98.0% | 76.4% |
| 5076824 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.53 | 43.0 | 2.64e-01 | 96.0% | 16.1% |
| 5055065 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 44.0 | 3.95e-01 | 98.0% | 88.0% |
| 3806930 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.53 | 45.0 | 3.66e-01 | 100.0% | 99.0% |
| 3492415 | 4086.1.1.1 ↗ | a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI | 0.52 | 33.0 | 2.99e-01 | 90.0% | 42.7% |
| 5000550 | 5.1.4.43 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 | 0.52 | 43.0 | 2.66e-01 | 100.0% | 22.5% |
| 3739112 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.52 | 42.0 | 3.38e-01 | 96.0% | 52.7% |
| 3785150 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 38.0 | 3.21e-01 | 88.0% | 43.0% |
| 5013082 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.51 | 44.0 | 3.29e-01 | 100.0% | 60.0% |
| 3399126 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 45.0 | 3.23e-01 | 100.0% | 70.3% |
| 5011212 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.51 | 43.0 | 2.73e-01 | 98.0% | 19.1% |
| 5013673 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.51 | 41.0 | 2.82e-01 | 90.0% | 45.6% |
| 5062944 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 37.0 | 3.84e-01 | 96.0% | 93.2% |
| 3709649 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.51 | 40.0 | 3.13e-01 | 96.0% | 40.8% |
| 3237286 | 2.3.1.3 ↗ | beta barrels › OB-fold › TIMP-like › TIMP-like › NtA | 0.51 | 41.0 | 3.35e-01 | 98.0% | 82.9% |
| 4024397 | 59.1.1.0 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like | 0.50 | 38.0 | 2.92e-01 | 96.0% | 33.5% |
D2
high
residues 74-145
Domain cluster:
rep: IMGVR_UViG_3300033178_000013-3300033178-Ga0334885_100127030__D1-69