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IMGVR_UViG_3300009654_000048-3300009654-Ga0116167_100205718

Arc-Vir

IMGVR_UViG_3300009654_000048-3300009654-Ga0116167_100205718

Quality

83.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-129
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06199.18 best Phage_tail_2 27.5 3.90e-06 92.7% 81.1%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.69 63.0 5.74e-01 99.2% 83.1%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.68 62.0 5.98e-01 99.2% 93.4%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.68 49.0 5.50e-01 93.5% 96.8%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.67 46.0 4.65e-01 93.5% 69.6%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.66 59.0 5.44e-01 96.7% 89.1%
4lfhD02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 34.0 4.04e-01 89.4% 72.9%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 48.0 4.51e-01 100.0% 63.9%
1wthD01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 49.0 5.24e-01 98.4% 93.4%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 53.0 5.62e-01 97.6% 100.0%
3q0bX00 2.30.280.10 Mainly Beta › Roll › PUA domain-like › SRA-YDG 0.60 53.0 4.94e-01 97.6% 79.1%
3bpkA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 54.0 4.73e-01 100.0% 77.1%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 53.0 5.00e-01 100.0% 81.6%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 36.0 3.96e-01 89.4% 77.0%
3f7eA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 50.0 4.95e-01 100.0% 89.8%
2gujA01 2.30.110.40 Mainly Beta › Roll › Pnp Oxidase; Chain A › Phage tail tube protein 0.58 51.0 5.02e-01 100.0% 92.4%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 35.0 4.07e-01 100.0% 87.4%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.57 37.0 4.22e-01 99.2% 91.0%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 30.0 3.58e-01 94.3% 80.3%
2pb7A01 2.30.280.10 Mainly Beta › Roll › PUA domain-like › SRA-YDG 0.56 50.0 4.44e-01 98.4% 83.6%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.55 49.0 4.39e-01 95.9% 73.5%
2ausC02 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.55 37.0 3.22e-01 85.4% 43.8%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.53 48.0 3.99e-01 97.6% 83.8%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 36.0 3.87e-01 79.7% 84.3%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.52 30.0 3.25e-01 80.5% 64.4%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.51 45.0 4.39e-01 98.4% 92.6%
2pmzB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.50 39.0 3.95e-01 82.9% 94.4%
1ye9A02 2.40.470.10 Mainly Beta › Beta Barrel › catalase hpii fold › catalase hpii domain 0.50 31.0 3.31e-01 100.0% 68.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2642579 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.88 84.0 8.22e-01 100.0% 96.2%
4157825 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.87 83.0 8.13e-01 100.0% 97.7%
2674670 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.86 81.0 7.10e-01 100.0% 76.7%
2595159 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.85 80.0 7.13e-01 100.0% 81.3%
5082881 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.83 77.0 7.67e-01 97.6% 100.0%
4888726 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.81 76.0 6.83e-01 100.0% 83.5%
5004308 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.78 73.0 6.69e-01 100.0% 93.5%
4873215 1.1.13.11 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.77 71.0 6.83e-01 100.0% 90.7%
3967003 1.1.13.35 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_11 0.77 73.0 6.93e-01 100.0% 96.4%
4929587 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 54.0 6.28e-01 92.7% 100.0%
4957560 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 70.0 6.92e-01 100.0% 99.2%
3964955 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 70.0 6.36e-01 100.0% 98.8%
3972305 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 51.0 5.86e-01 94.3% 100.0%
3966429 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.72 51.0 5.87e-01 94.3% 100.0%
4393593 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.72 54.0 6.00e-01 95.9% 100.0%
2387782 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.72 66.0 5.90e-01 100.0% 86.9%
3943681 1.1.13.47 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.71 63.0 5.90e-01 96.7% 98.7%
4034209 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.70 62.0 6.02e-01 94.3% 100.0%
1914511 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.70 52.0 5.16e-01 100.0% 74.8%
3256920 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 48.0 4.77e-01 92.7% 68.8%
1444177 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 62.0 6.02e-01 99.2% 94.1%
4319057 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.68 50.0 5.22e-01 100.0% 82.6%
3580020 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 61.0 5.22e-01 99.2% 82.6%
5002750 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 54.0 5.81e-01 94.3% 100.0%
4033579 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.67 57.0 5.76e-01 93.5% 100.0%
4094235 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.67 51.0 5.09e-01 100.0% 78.4%
4888819 1.1.13.10 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_1 0.67 53.0 5.61e-01 95.9% 93.7%
4960006 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.66 51.0 5.36e-01 100.0% 91.7%
4888732 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.66 60.0 5.54e-01 99.2% 82.7%
3059162 1.1.13.30 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 0.66 60.0 6.04e-01 97.6% 98.4%
3164699 1.1.13.33 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N 0.66 57.0 5.85e-01 95.9% 100.0%
4247994 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.66 51.0 5.57e-01 94.3% 100.0%
4036849 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.65 52.0 5.11e-01 100.0% 78.2%
3978573 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.65 51.0 5.48e-01 96.7% 99.0%
3944430 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.61 45.0 4.83e-01 91.9% 89.5%
3190573 706.2.1.0 beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G 0.61 29.0 4.04e-01 85.4% 100.0%
3943689 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.60 46.0 4.86e-01 91.9% 89.1%
4935003 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.60 29.0 3.65e-01 89.4% 76.0%
4958525 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.59 31.0 3.65e-01 96.7% 72.9%
5014259 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.59 31.0 3.72e-01 96.7% 75.3%
5052131 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.58 33.0 3.66e-01 94.3% 69.5%
5071836 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.58 32.0 3.69e-01 100.0% 73.3%
4994606 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.58 33.0 3.73e-01 98.4% 72.6%
4956107 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.57 35.0 3.59e-01 95.9% 62.5%
3603587 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.56 30.0 3.56e-01 95.1% 74.1%
4117439 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.56 35.0 3.78e-01 99.2% 73.3%
3285688 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.56 31.0 3.53e-01 93.5% 70.5%
5073696 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.55 34.0 3.61e-01 96.7% 68.2%
5076771 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.55 35.0 3.69e-01 96.7% 70.9%
4939419 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.55 30.0 3.49e-01 95.9% 74.1%
4971337 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.55 30.0 3.47e-01 95.1% 75.3%
4946617 512.1.1.5 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_3rd 0.54 34.0 3.59e-01 100.0% 67.8%
5011023 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.53 30.0 3.52e-01 95.9% 81.2%
5013602 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.53 29.0 3.37e-01 96.7% 72.2%
4994509 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.53 29.0 3.41e-01 95.1% 76.5%
4975536 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.52 33.0 3.25e-01 99.2% 59.2%
5010248 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.52 28.0 3.32e-01 95.9% 78.8%
3663962 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.50 44.0 3.43e-01 99.2% 56.2%
5860 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.50 32.0 3.21e-01 99.2% 59.8%