Back to structures

IMGVR_UViG_3300009654_000621-3300009654-Ga0116167_10084133

Arc-Vir

IMGVR_UViG_3300009654_000621-3300009654-Ga0116167_10084133

Quality

87.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-71
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.83 58.0 4.42e-01 73.0% 68.4%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.82 58.0 4.73e-01 73.0% 63.2%
1h8mA00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.71 55.0 4.32e-01 85.7% 39.3%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.70 50.0 4.26e-01 81.0% 45.7%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.69 61.0 5.76e-01 100.0% 93.3%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 52.0 4.63e-01 88.9% 57.3%
6j7xC01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.68 53.0 4.13e-01 85.7% 39.3%
1vl4A01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.68 47.0 3.32e-01 73.0% 32.7%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.68 52.0 4.19e-01 85.7% 43.0%
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.67 53.0 4.46e-01 90.5% 49.1%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 54.0 3.92e-01 88.9% 77.2%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 58.0 4.73e-01 100.0% 54.1%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.65 49.0 4.04e-01 84.1% 46.3%
2qq6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 46.0 3.91e-01 79.4% 83.6%
1mgtA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.64 47.0 4.24e-01 79.4% 97.7%
1skoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.64 47.0 3.89e-01 79.4% 57.8%
2r15A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 46.0 3.74e-01 93.7% 42.3%
7ct3A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.63 46.0 3.83e-01 79.4% 49.6%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.63 38.0 3.11e-01 73.0% 31.6%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.63 54.0 4.61e-01 98.4% 57.9%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 46.0 3.69e-01 77.8% 80.2%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 43.0 2.72e-01 71.4% 30.2%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 54.0 4.26e-01 93.7% 84.4%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.62 52.0 4.24e-01 92.1% 53.8%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 50.0 4.15e-01 90.5% 55.3%
5b7gA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.61 49.0 3.34e-01 90.5% 79.5%
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.61 42.0 3.68e-01 82.5% 46.5%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.61 46.0 3.51e-01 81.0% 47.2%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.61 37.0 3.27e-01 81.0% 43.3%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.60 42.0 3.32e-01 74.6% 34.1%
3nm6B00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.59 48.0 3.33e-01 90.5% 78.2%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.58 44.0 2.62e-01 93.7% 11.6%
1yprA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.58 44.0 3.61e-01 84.1% 62.4%
3bjeA01 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.57 43.0 2.81e-01 84.1% 96.2%
4g41A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.55 43.0 3.05e-01 92.1% 66.1%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 39.0 2.60e-01 76.2% 39.5%
4ktpB02 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.54 41.0 3.70e-01 79.4% 64.6%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 39.0 2.68e-01 79.4% 48.7%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 39.0 2.62e-01 77.8% 47.9%
1efpB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 38.0 2.62e-01 76.2% 44.7%
6sulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 39.0 3.26e-01 77.8% 54.6%
1xm8A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 42.0 2.84e-01 92.1% 63.4%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.51 43.0 3.35e-01 96.8% 55.9%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 39.0 3.25e-01 90.5% 90.7%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 35.0 2.99e-01 73.0% 72.5%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 38.0 2.66e-01 87.3% 89.4%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3827261 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.76 62.0 4.84e-01 90.5% 43.1%
5000881 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.75 66.0 4.88e-01 95.2% 56.8%
4933539 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.73 50.0 3.41e-01 71.4% 23.7%
4034138 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.72 55.0 4.26e-01 81.0% 39.8%
5046009 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 57.0 4.55e-01 88.9% 44.6%
3461881 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.71 55.0 4.45e-01 85.7% 43.2%
4947581 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 57.0 4.83e-01 90.5% 54.5%
5076068 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.71 56.0 4.80e-01 88.9% 54.3%
5079671 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 55.0 4.63e-01 85.7% 53.6%
5045350 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 54.0 4.24e-01 90.5% 40.0%
5049690 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 56.0 4.38e-01 90.5% 40.0%
5051015 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 54.0 4.14e-01 85.7% 34.8%
5006876 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 52.0 4.34e-01 81.0% 45.1%
5074437 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 53.0 4.51e-01 84.1% 49.5%
5045235 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 54.0 4.28e-01 92.1% 40.8%
5001238 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 54.0 4.54e-01 88.9% 49.1%
5046979 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 54.0 4.57e-01 85.7% 52.7%
5049789 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 56.0 4.44e-01 95.2% 44.0%
5074649 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 53.0 4.30e-01 84.1% 43.2%
3518991 284.1.3.4 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.69 48.0 4.57e-01 73.0% 69.3%
4997139 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 56.0 4.39e-01 90.5% 42.2%
5044629 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 52.0 4.36e-01 84.1% 52.2%
5079402 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 56.0 4.47e-01 92.1% 57.7%
5072591 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 53.0 4.41e-01 95.2% 47.0%
5050909 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 56.0 4.42e-01 90.5% 43.8%
5049349 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 53.0 4.07e-01 87.3% 35.5%
4978622 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 53.0 4.64e-01 87.3% 56.0%
5072371 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 52.0 4.57e-01 85.7% 55.0%
5036974 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 50.0 4.27e-01 79.4% 49.0%
4946458 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 54.0 4.26e-01 88.9% 41.5%
5074455 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 53.0 4.48e-01 88.9% 54.5%
4944469 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 54.0 4.30e-01 90.5% 43.8%
3475200 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.67 54.0 4.29e-01 90.5% 43.1%
3834262 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.66 54.0 4.28e-01 95.2% 42.1%
5051614 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 53.0 4.30e-01 90.5% 49.6%
4980097 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 52.0 4.24e-01 88.9% 44.8%
3714703 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.66 52.0 4.35e-01 82.5% 58.0%
4978284 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 51.0 4.25e-01 90.5% 46.7%
5045959 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 52.0 4.41e-01 90.5% 54.5%
4996048 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 50.0 4.14e-01 90.5% 44.6%
5077444 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 51.0 4.06e-01 90.5% 41.5%
3408914 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.64 51.0 4.13e-01 96.8% 43.8%
3620870 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 49.0 4.28e-01 84.1% 66.0%
5001270 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.64 49.0 4.52e-01 84.1% 63.7%
3709800 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 46.0 4.07e-01 81.0% 51.6%
3740759 4099.1.1.3 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.64 45.0 4.60e-01 73.0% 80.0%
5075279 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 51.0 4.26e-01 90.5% 52.2%
3628286 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.63 50.0 4.08e-01 90.5% 43.8%
4492101 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.63 44.0 4.01e-01 74.6% 83.3%
3882038 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.63 49.0 3.72e-01 85.7% 40.0%
5014319 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 43.0 4.24e-01 71.4% 77.9%
3490881 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.62 50.0 4.10e-01 90.5% 46.0%
2140453 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.62 49.0 4.01e-01 90.5% 45.2%
3255285 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.61 48.0 4.01e-01 90.5% 53.7%
3519046 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.61 47.0 3.99e-01 90.5% 47.5%
4028791 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.61 44.0 4.68e-01 84.1% 89.1%
4962224 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.61 45.0 3.27e-01 77.8% 58.2%
4024234 2003.1.5.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › mRNA_G-N7_MeTrfase 0.60 44.0 2.75e-01 79.4% 22.9%
4990916 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.60 41.0 3.54e-01 71.4% 45.0%
3567966 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.60 39.0 3.39e-01 71.4% 44.2%
5079015 2484.1.1.71 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RACo_C_ter 0.59 48.0 3.19e-01 88.9% 31.4%
4938191 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 41.0 3.52e-01 76.2% 68.9%
3810658 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.56 38.0 2.69e-01 71.4% 27.0%
4932470 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 39.0 3.46e-01 73.0% 68.9%
5052285 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 3.55e-01 81.0% 51.4%
3979711 252.2.1.6 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_2 0.54 38.0 3.86e-01 84.1% 78.5%
3500237 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.53 36.0 2.79e-01 71.4% 52.7%
3769483 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 38.0 3.12e-01 84.1% 52.0%