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IMGVR_UViG_3300009655_000180-3300009655-Ga0116190_10096036

Arc-Vir

IMGVR_UViG_3300009655_000180-3300009655-Ga0116190_10096036

Quality

80.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 153-263_317-332
PDB
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ohgA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.78 60.0 6.52e-01 96.9% 96.2%
7mh2A01 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.72 51.0 5.87e-01 92.9% 98.9%
3bjqA00 3.90.1690.10 Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain 0.66 62.0 4.61e-01 100.0% 58.1%
3bqwA02 3.30.1930.10 Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain 0.63 58.0 5.67e-01 97.6% 97.8%
1yueA03 3.30.2320.40 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › 0.60 51.0 5.28e-01 96.9% 95.0%
3obyA03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.59 40.0 4.40e-01 98.4% 88.9%
2qi2A03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.58 37.0 4.12e-01 98.4% 84.0%
4iq0C02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 33.0 2.97e-01 98.4% 40.3%
3wxmB03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.55 38.0 4.10e-01 95.3% 85.0%
3v7eA00 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.52 32.0 3.80e-01 99.2% 95.1%
3tz6A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 39.0 3.36e-01 78.7% 99.0%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2989372 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.80 76.0 5.54e-01 100.0% 53.3%
2989506 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.79 75.0 5.54e-01 100.0% 59.3%
2989340 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.79 75.0 5.42e-01 100.0% 56.2%
2989289 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.74 70.0 5.07e-01 100.0% 55.4%
2651377 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.69 65.0 4.82e-01 100.0% 53.9%
5083777 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.69 65.0 4.81e-01 100.0% 48.3%
2989363 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.68 64.0 4.69e-01 100.0% 54.5%
1877546 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.68 64.0 4.70e-01 100.0% 53.0%
3946670 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.67 63.0 4.80e-01 100.0% 56.7%
3965498 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.67 62.0 4.52e-01 100.0% 54.3%
3952452 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.67 62.0 4.65e-01 100.0% 53.2%
2899245 2485.3.1.10 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 0.66 62.0 4.42e-01 100.0% 51.0%
4988094 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.66 62.0 4.81e-01 100.0% 60.8%
2989356 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.65 61.0 4.58e-01 100.0% 53.7%
2129825 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.65 61.0 4.61e-01 100.0% 51.4%
2639625 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.65 60.0 4.60e-01 100.0% 51.4%
1005479 2485.3.1.1 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.64 61.0 4.31e-01 100.0% 59.1%
5083079 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.64 60.0 4.36e-01 100.0% 46.8%
3949155 2485.3.1.11 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.64 60.0 4.63e-01 100.0% 57.4%
4313471 2485.3.1.11 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.64 60.0 4.44e-01 100.0% 51.0%
2538948 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.64 59.0 4.41e-01 100.0% 51.8%
3583655 2485.3.1.5 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 0.63 59.0 4.30e-01 100.0% 55.0%
3944238 2485.3.1.7 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside 0.61 57.0 4.32e-01 100.0% 56.2%
4031028 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.61 56.0 4.30e-01 100.0% 54.6%
5002389 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.60 55.0 4.22e-01 100.0% 57.1%
5011908 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.60 56.0 4.44e-01 100.0% 53.8%
5081698 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.58 54.0 4.01e-01 100.0% 59.0%
D2 medium residues 39-57_84-150_269-310
PDB
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ohgA01 3.30.2400.10 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 0.78 74.0 7.03e-01 100.0% 95.2%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.68 42.0 4.29e-01 93.0% 62.5%
1j27A00 3.30.70.1120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TT1725-like 0.67 32.0 3.66e-01 84.4% 59.2%
1fp5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 33.0 3.74e-01 92.2% 63.0%
4jvuA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 33.0 3.53e-01 92.2% 55.5%
6i9gA01 3.30.2400.30 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › 0.63 58.0 5.28e-01 100.0% 78.1%
4hvzA02 3.30.70.2970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 0.62 40.0 4.29e-01 89.8% 74.1%
3dktA01 3.30.2400.30 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › 0.62 57.0 5.17e-01 100.0% 78.1%
1ekrA00 3.30.70.640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain 0.62 42.0 4.05e-01 83.6% 61.5%
4a2aA02 3.30.1490.110 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.60 38.0 4.42e-01 89.1% 93.1%
2okqB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 36.0 3.79e-01 90.6% 70.3%
3vsmA03 2.60.40.4340 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 27.0 3.08e-01 78.9% 66.0%
1go3E02 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.51 31.0 3.74e-01 80.5% 95.1%
7zvsB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 34.0 3.79e-01 100.0% 87.9%
2c5dC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 26.0 2.91e-01 92.2% 59.6%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 31.0 2.93e-01 79.7% 51.0%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2989340 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.88 85.0 6.09e-01 100.0% 81.3%
2989506 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.85 80.0 5.93e-01 100.0% 86.1%
2989372 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.84 81.0 5.89e-01 100.0% 82.2%
1877546 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.83 79.0 5.81e-01 100.0% 86.7%
2989289 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.82 79.0 5.63e-01 100.0% 81.7%
2989363 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.81 76.0 5.58e-01 100.0% 86.0%
2989356 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.79 75.0 5.54e-01 100.0% 86.1%
3946670 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.77 74.0 5.57e-01 100.0% 81.5%
5041371 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.75 71.0 5.19e-01 100.0% 90.3%
2841509 2485.3.1.12 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 0.75 70.0 5.23e-01 100.0% 85.7%
5081487 2485.3.1.10 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 0.74 70.0 5.31e-01 100.0% 93.4%
4884207 2485.3.1.7 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside 0.73 69.0 5.14e-01 100.0% 84.8%
3949155 2485.3.1.11 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.72 68.0 5.22e-01 100.0% 85.7%
3965498 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.72 68.0 4.92e-01 100.0% 86.4%
5080806 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.72 67.0 5.08e-01 100.0% 93.3%
2995627 2485.3.1.7 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside 0.71 66.0 4.93e-01 100.0% 85.0%
3952452 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.71 66.0 4.97e-01 100.0% 82.6%
3026399 3555.1.1.1 a+b three layers › Major capsid protein GP7 › Major capsid protein GP7 › Major capsid protein GP7 › GP7 0.71 65.0 4.74e-01 100.0% 57.3%
3583655 2485.3.1.5 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 0.70 67.0 4.83e-01 100.0% 85.9%
4929755 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.70 67.0 5.05e-01 100.0% 82.2%
4313471 2485.3.1.11 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.70 66.0 4.90e-01 100.0% 81.0%
2899245 2485.3.1.10 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 0.70 66.0 4.69e-01 100.0% 86.5%
3944238 2485.3.1.7 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside 0.70 65.0 4.92e-01 100.0% 91.5%
2995325 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.69 65.0 4.55e-01 100.0% 83.4%
4988094 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.69 65.0 5.07e-01 100.0% 84.7%
4890673 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.69 65.0 4.62e-01 100.0% 82.5%
3992388 872.3.1.5 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.69 50.0 5.07e-01 100.0% 76.0%
3977985 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.67 63.0 4.48e-01 100.0% 71.0%
5081698 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.66 62.0 4.60e-01 100.0% 85.2%
4955362 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.66 61.0 4.96e-01 100.0% 87.6%
2842229 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.66 61.0 4.32e-01 100.0% 85.5%
4991535 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.64 59.0 4.70e-01 100.0% 84.1%
2831773 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.63 58.0 4.55e-01 100.0% 81.6%
2553816 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.63 58.0 4.54e-01 100.0% 81.9%
2724409 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.62 57.0 4.44e-01 100.0% 81.9%
3953979 304.5.1.2 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF190 0.57 35.0 3.78e-01 82.8% 70.9%
4133168 304.44.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › PriA_C 0.55 32.0 3.50e-01 94.5% 68.6%
3226194 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.55 39.0 3.96e-01 98.4% 73.1%
3738924 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.54 30.0 3.54e-01 82.0% 77.8%
3170803 12.1.1.44 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_5_C 0.52 30.0 3.43e-01 77.3% 75.8%
1921523 872.1.1.1 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N 0.52 39.0 4.02e-01 92.2% 84.0%
3933937 321.1.1.4 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N 0.51 39.0 2.94e-01 81.2% 55.9%
3744646 3519.1.1.1 beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Pex24p 0.51 37.0 4.10e-01 93.0% 94.3%