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IMGVR_UViG_3300009657_000547-3300009657-Ga0116179_10036459

Arc-Vir

IMGVR_UViG_3300009657_000547-3300009657-Ga0116179_10036459

Quality

75.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-54
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kvnA02 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.76 69.0 4.19e-01 100.0% 56.5%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.73 57.0 4.98e-01 100.0% 56.0%
3fvcA02 1.20.5.1890 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.70 48.0 3.79e-01 100.0% 37.0%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.68 55.0 3.42e-01 98.1% 16.5%
4yg6B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 43.0 3.08e-01 100.0% 20.9%
5h7kA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 55.0 3.54e-01 90.4% 22.3%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.67 49.0 4.84e-01 90.4% 75.4%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 52.0 3.75e-01 98.1% 31.7%
2ztbA03 2.60.40.3040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 37.0 3.84e-01 84.6% 60.4%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.62 51.0 3.99e-01 90.4% 57.8%
4hziB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 43.0 2.78e-01 92.3% 15.5%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.62 47.0 3.02e-01 86.5% 68.7%
2e55A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 49.0 3.38e-01 96.2% 32.7%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 50.0 3.53e-01 98.1% 29.2%
4wjmA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 39.0 2.43e-01 73.1% 11.2%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 47.0 3.70e-01 92.3% 63.5%
5vogA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 47.0 3.28e-01 94.2% 26.7%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 52.0 3.99e-01 96.2% 45.9%
3bt7A02 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 48.0 3.58e-01 96.2% 75.9%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 3.92e-01 100.0% 48.2%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 52.0 4.05e-01 98.1% 61.3%
4q05A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 46.0 2.93e-01 98.1% 22.9%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 49.0 3.11e-01 100.0% 30.7%
1i5eA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 46.0 3.18e-01 96.2% 32.2%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 41.0 2.87e-01 80.8% 96.8%
2v1xA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 48.0 3.85e-01 100.0% 67.3%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.56 47.0 3.98e-01 98.1% 67.4%
1wp0A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 48.0 3.36e-01 96.2% 63.7%
4qpkB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 44.0 3.36e-01 92.3% 53.7%
1a97B00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 40.0 2.97e-01 82.7% 90.5%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 40.0 2.83e-01 86.5% 47.8%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.52 40.0 2.64e-01 86.5% 37.4%
2hoeA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 33.0 3.16e-01 88.5% 56.9%
3f1yA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 43.0 2.70e-01 98.1% 61.3%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 43.0 3.73e-01 96.2% 80.0%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 40.0 2.72e-01 98.1% 28.7%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 38.0 3.22e-01 86.5% 76.5%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.50 42.0 3.65e-01 92.3% 74.4%
2k6vA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 38.0 2.74e-01 86.5% 66.9%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.50 38.0 3.47e-01 90.4% 72.5%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965375 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.81 58.0 4.08e-01 88.5% 26.0%
3867638 109.4.1.32 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G 0.72 50.0 3.08e-01 100.0% 12.3%
1278602 223.3.1.1 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.71 54.0 5.20e-01 88.5% 73.3%
3233638 5001.1.1.66 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.71 56.0 3.45e-01 86.5% 22.3%
4214882 4099.1.1.32 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30019 0.70 48.0 3.30e-01 75.0% 22.4%
4954114 4203.1.1.0 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.69 50.0 4.81e-01 88.5% 68.3%
4953964 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 58.0 4.65e-01 100.0% 54.5%
3299745 207.1.1.185 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_6 0.68 45.0 2.70e-01 100.0% 9.1%
3377363 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.68 40.0 2.20e-01 73.1% 4.1%
4945232 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 53.0 4.10e-01 98.1% 38.3%
3272269 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.67 44.0 2.89e-01 73.1% 15.9%
3381794 207.1.1.57 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_4,LRR_6,LRR_8 0.67 53.0 2.83e-01 86.5% 5.2%
3957084 4019.1.1.1 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.66 44.0 3.92e-01 71.2% 46.3%
3252212 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.66 52.0 4.54e-01 90.4% 58.7%
3603400 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.66 48.0 4.27e-01 98.1% 54.7%
4446761 3433.1.2.0 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain 0.65 46.0 4.57e-01 98.1% 70.9%
3207498 3409.1.1.3 a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › ATG14 0.65 53.0 3.20e-01 88.5% 27.6%
5060820 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.65 45.0 2.63e-01 73.1% 8.9%
4505972 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.63 49.0 3.01e-01 84.6% 14.4%
3277086 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 50.0 4.19e-01 92.3% 66.3%
4880634 223.3.1.1 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.62 44.0 4.31e-01 82.7% 69.5%
4964750 604.2.1.1 alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C 0.62 46.0 3.26e-01 78.8% 34.0%
5038034 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.61 55.0 4.56e-01 100.0% 85.6%
3634662 327.11.2.19 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_11 0.61 43.0 3.64e-01 75.0% 80.0%
3168940 109.4.1.64 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 0.60 53.0 3.25e-01 98.1% 32.3%
3438351 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.60 48.0 3.37e-01 86.5% 51.6%
6885 223.3.1.1 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.60 41.0 4.08e-01 78.8% 67.9%
3256330 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 49.0 4.19e-01 98.1% 64.2%
3381391 207.1.1.55 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.59 40.0 2.48e-01 86.5% 11.4%
3208120 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.59 53.0 3.74e-01 100.0% 62.6%
141070 223.3.1.1 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.59 47.0 4.62e-01 92.3% 87.7%
3168821 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.59 48.0 2.97e-01 92.3% 25.7%
3356481 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.58 43.0 3.68e-01 78.8% 63.9%
3217385 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 44.0 3.94e-01 92.3% 56.5%
3267673 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 44.0 3.95e-01 92.3% 67.1%
3481511 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 39.0 3.59e-01 90.4% 52.0%
3803650 109.4.1.1335 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, E_motif 0.56 50.0 2.81e-01 100.0% 9.2%
4996620 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 3.39e-01 92.3% 44.4%
3992603 273.1.1.1 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.56 48.0 2.98e-01 94.2% 43.2%
3940062 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 44.0 2.77e-01 90.4% 45.4%
3785947 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.55 47.0 3.61e-01 100.0% 62.4%
3313373 4276.1.1.0 a+b two layers › XisI-like › XisI-like › XisI-like 0.55 45.0 3.91e-01 92.3% 78.8%
4011869 327.11.2.19 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_11 0.54 38.0 2.83e-01 80.8% 77.7%
3377656 207.1.1.137 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8 0.54 41.0 2.33e-01 100.0% 8.0%
4989946 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.54 47.0 3.74e-01 100.0% 78.2%
3641285 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.54 43.0 2.47e-01 92.3% 8.7%
5041315 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 41.0 3.43e-01 90.4% 69.0%
3367891 109.4.1.1272 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.52 41.0 2.54e-01 88.5% 19.7%
3369483 109.4.1.1272 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.52 44.0 2.78e-01 94.2% 24.8%
4946426 3241.1.1.0 alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 0.52 37.0 2.60e-01 82.7% 34.4%
5078195 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.28e-01 96.2% 53.3%
4976065 604.2.1.0 alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 0.51 45.0 3.35e-01 100.0% 58.2%
4958593 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.51 43.0 2.75e-01 94.2% 22.8%
4936391 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.51 44.0 2.74e-01 94.2% 20.0%
5017355 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.50 43.0 2.73e-01 96.2% 19.6%