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IMGVR_UViG_3300009669_000798-3300009669-Ga0116148_10143119

Arc-Vir

IMGVR_UViG_3300009669_000798-3300009669-Ga0116148_10143119

Quality

89.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-112
PDB
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.82 64.0 4.88e-01 91.8% 37.5%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.80 66.0 5.02e-01 93.6% 39.2%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.79 64.0 4.85e-01 92.7% 38.5%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 64.0 6.13e-01 91.8% 75.8%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 60.0 5.77e-01 93.6% 69.8%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 64.0 4.89e-01 92.7% 39.9%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 63.0 4.80e-01 93.6% 38.2%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 63.0 4.78e-01 91.8% 38.8%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 65.0 4.89e-01 94.5% 38.8%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.76 62.0 4.68e-01 93.6% 37.2%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 60.0 4.62e-01 92.7% 39.3%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 59.0 4.64e-01 94.5% 42.1%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.73 68.0 5.01e-01 100.0% 52.4%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.71 61.0 5.77e-01 94.5% 79.7%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.68 59.0 5.10e-01 96.4% 64.6%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.67 59.0 4.53e-01 98.2% 48.2%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.67 60.0 4.39e-01 100.0% 48.7%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.61 44.0 4.61e-01 94.5% 81.6%
6btdA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.55 40.0 3.32e-01 76.4% 70.9%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 40.0 3.37e-01 79.1% 81.3%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 32.0 3.65e-01 72.7% 81.9%
1gofA02 2.130.10.80 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller 0.52 38.0 2.72e-01 80.0% 61.9%
6i4pA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 35.0 3.42e-01 71.8% 93.7%
3stoA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 35.0 3.19e-01 70.9% 70.5%
2o1uB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 41.0 3.61e-01 88.2% 97.0%
1pvgA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 43.0 3.35e-01 94.5% 81.1%
2xlpB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 38.0 2.71e-01 80.9% 70.1%
ECOD (92)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4983063 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.81 67.0 6.37e-01 92.7% 76.0%
4939065 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.81 66.0 6.42e-01 92.7% 78.3%
4941928 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.81 67.0 6.48e-01 93.6% 80.0%
5070586 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.81 66.0 6.31e-01 92.7% 76.0%
4870150 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.80 66.0 6.13e-01 93.6% 71.6%
4943404 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 67.0 6.30e-01 93.6% 75.4%
5056757 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.80 65.0 6.27e-01 93.6% 76.8%
4980359 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 64.0 6.20e-01 92.7% 77.5%
3599554 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.79 72.0 6.37e-01 96.4% 94.0%
4937819 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 64.0 6.16e-01 92.7% 76.0%
4936049 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 63.0 6.15e-01 92.7% 77.5%
4142781 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 64.0 6.19e-01 93.6% 76.8%
4956739 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 65.0 6.24e-01 93.6% 77.6%
4178829 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.78 65.0 6.25e-01 94.5% 77.6%
162047 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.78 65.0 6.17e-01 95.5% 76.4%
3251868 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.78 71.0 6.47e-01 96.4% 95.7%
1822927 227.1.1.2 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 64.0 5.58e-01 93.6% 58.9%
5052550 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.78 64.0 6.14e-01 93.6% 76.8%
2442100 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.78 65.0 6.00e-01 93.6% 71.3%
4934001 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.78 65.0 6.19e-01 93.6% 77.6%
4302174 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.78 63.0 6.08e-01 92.7% 76.0%
3193266 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.78 69.0 6.27e-01 95.5% 94.5%
4057537 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.78 63.0 6.06e-01 92.7% 76.0%
5027066 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.78 65.0 6.19e-01 94.5% 77.6%
3743107 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.78 69.0 6.33e-01 95.5% 95.0%
5044014 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 63.0 6.21e-01 92.7% 82.6%
5043506 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 63.0 6.03e-01 93.6% 76.0%
143269 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 63.0 6.08e-01 91.8% 76.8%
2392830 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 65.0 6.11e-01 93.6% 75.6%
5078494 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 62.0 5.92e-01 92.7% 75.2%
4043935 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 63.0 5.94e-01 93.6% 73.8%
3602548 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 61.0 5.86e-01 93.6% 75.2%
3787933 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.76 71.0 6.17e-01 100.0% 93.8%
3613685 227.1.1.17 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N 0.76 67.0 6.14e-01 94.5% 78.6%
3936914 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.76 62.0 5.86e-01 95.5% 73.8%
3351110 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 62.0 6.08e-01 93.6% 80.8%
4646871 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.75 61.0 5.83e-01 94.5% 76.0%
5056758 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.75 60.0 5.95e-01 95.5% 81.7%
3507498 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.75 69.0 6.15e-01 100.0% 95.3%
5051689 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.75 62.0 5.91e-01 94.5% 77.6%
5000467 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.74 65.0 6.02e-01 93.6% 77.0%
5023031 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.74 62.0 5.97e-01 94.5% 79.2%
2834340 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.74 64.0 5.96e-01 94.5% 77.0%
4038410 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.74 63.0 5.80e-01 91.8% 77.1%
3597091 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.74 60.0 5.75e-01 93.6% 76.6%
3722114 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.74 64.0 5.71e-01 94.5% 76.8%
3719938 227.1.1.17 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N 0.73 64.0 5.91e-01 94.5% 78.6%
5074321 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.73 59.0 5.70e-01 94.5% 76.0%
3738030 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.73 61.0 5.74e-01 94.5% 74.1%
4232371 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.73 59.0 5.73e-01 94.5% 79.2%
5000468 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.73 61.0 5.90e-01 94.5% 80.0%
3480669 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.72 67.0 6.07e-01 100.0% 97.9%
3534499 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.72 63.0 5.75e-01 94.5% 80.0%
3520418 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.72 63.0 5.63e-01 93.6% 76.7%
5039027 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.72 59.0 5.74e-01 94.5% 80.0%
4956740 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.72 59.0 5.68e-01 95.5% 77.6%
4998584 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.72 67.0 6.20e-01 100.0% 95.6%
3788095 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.72 67.0 6.21e-01 100.0% 94.8%
3503503 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.72 65.0 5.88e-01 98.2% 96.6%
3625038 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.72 66.0 6.03e-01 100.0% 97.1%
3702817 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.71 58.0 5.44e-01 93.6% 71.6%
3478161 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.71 64.0 6.01e-01 98.2% 96.3%
3244229 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.71 60.0 5.78e-01 95.5% 80.8%
3789624 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.71 63.0 5.86e-01 98.2% 95.7%
3623607 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.71 65.0 5.96e-01 100.0% 94.3%
138072 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.71 61.0 5.74e-01 94.5% 77.9%
1290662 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.71 60.0 5.51e-01 93.6% 70.6%
3785352 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.71 64.0 5.61e-01 100.0% 91.5%
3798354 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.71 64.0 6.02e-01 100.0% 96.3%
5074320 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.71 61.0 5.80e-01 94.5% 94.6%
4608521 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.70 64.0 5.24e-01 100.0% 78.0%
3939755 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.70 64.0 5.78e-01 100.0% 88.5%
3397928 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.70 63.0 6.08e-01 98.2% 99.2%
143267 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.70 62.0 5.88e-01 95.5% 94.5%
4987602 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.70 63.0 6.05e-01 98.2% 95.2%
3936915 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.70 63.0 5.99e-01 100.0% 96.9%
4014655 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.70 63.0 5.73e-01 100.0% 94.5%
3804177 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.69 63.0 5.72e-01 99.1% 97.2%
3719143 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.69 63.0 5.89e-01 100.0% 93.3%
3625037 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.69 60.0 5.66e-01 95.5% 81.5%
3598259 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.69 60.0 5.57e-01 92.7% 76.3%
3789625 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.69 60.0 5.61e-01 95.5% 80.7%
5047575 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.69 63.0 6.05e-01 100.0% 96.0%
3256904 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.68 61.0 5.83e-01 98.2% 97.6%
4939066 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.67 61.0 5.83e-01 100.0% 96.1%
3256386 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.67 61.0 5.70e-01 100.0% 94.1%
3551142 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.67 61.0 5.54e-01 100.0% 86.2%
4172290 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.67 60.0 5.71e-01 99.1% 94.6%
5039026 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.67 62.0 6.03e-01 100.0% 92.5%
3588565 6048.1.1.1 a+b two layers › DUF960-like › DUF960-like › DUF960-like › DUF960 0.57 42.0 4.59e-01 93.6% 97.7%
4941490 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.53 40.0 3.74e-01 87.3% 64.4%
3519117 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 38.0 3.18e-01 79.1% 77.4%