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IMGVR_UViG_3300009670_000695-3300009670-Ga0116183_10113584

Arc-Vir

IMGVR_UViG_3300009670_000695-3300009670-Ga0116183_10113584

Quality

81.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-35
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.86 62.0 4.25e-01 77.1% 24.8%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.78 59.0 4.15e-01 82.9% 26.1%
4hsaF02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.76 57.0 4.14e-01 85.7% 29.5%
2xwxA03 2.60.40.2550 Mainly Beta › Sandwich › Immunoglobulin-like › 0.75 55.0 4.11e-01 85.7% 30.6%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.74 54.0 4.02e-01 82.9% 30.2%
2g3aA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.73 51.0 3.72e-01 77.1% 25.7%
4iknA01 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.72 58.0 3.97e-01 100.0% 56.6%
7kseA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.70 50.0 3.41e-01 82.9% 21.9%
2w1nA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 48.0 3.78e-01 77.1% 32.9%
5dcaA08 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.68 49.0 3.60e-01 82.9% 30.0%
3ks7A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.68 48.0 3.20e-01 88.6% 78.8%
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.67 50.0 3.06e-01 82.9% 12.6%
4htlA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 46.0 3.39e-01 71.4% 25.0%
3mxqC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 48.0 3.41e-01 88.6% 24.0%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 46.0 3.39e-01 82.9% 25.4%
4e19A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.65 45.0 3.18e-01 80.0% 21.8%
6p3xB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.63 45.0 3.00e-01 85.7% 18.1%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.63 45.0 2.77e-01 80.0% 44.4%
4qclA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 43.0 3.10e-01 71.4% 94.6%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 45.0 3.26e-01 82.9% 24.4%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.61 43.0 3.42e-01 82.9% 32.6%
2v0uA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 43.0 3.01e-01 80.0% 19.2%
2znhA03 6.20.40.10 Special › Other non-globular › Porin MspA ribbon fold › 0.61 44.0 4.12e-01 88.6% 61.7%
3kq4B03 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.61 45.0 3.20e-01 82.9% 46.4%
8p97A01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.61 47.0 2.63e-01 100.0% 9.0%
3kq4B02 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.60 44.0 3.14e-01 82.9% 44.9%
4rx6D00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 42.0 3.13e-01 77.1% 86.9%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.59 45.0 4.29e-01 82.9% 63.0%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 41.0 2.92e-01 71.4% 24.6%
3k3dA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 41.0 2.98e-01 80.0% 30.2%
7sxqA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 43.0 2.63e-01 80.0% 11.3%
1cdcA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 3.37e-01 85.7% 31.2%
4fvmA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 40.0 3.00e-01 71.4% 93.2%
1k8iB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.58 43.0 3.37e-01 77.1% 29.7%
4i5sA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 39.0 3.06e-01 74.3% 40.8%
2onfA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.57 42.0 2.99e-01 88.6% 52.2%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.56 45.0 3.21e-01 91.4% 28.9%
4tw1B00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.56 43.0 2.66e-01 97.1% 12.1%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.56 43.0 2.68e-01 100.0% 76.2%
7b1cD01 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.56 43.0 3.46e-01 100.0% 39.8%
3luqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 37.0 2.86e-01 77.1% 34.2%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 40.0 2.50e-01 94.3% 26.0%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 38.0 3.08e-01 88.6% 31.2%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 40.0 3.07e-01 88.6% 29.5%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 40.0 3.10e-01 94.3% 32.4%
2e8eA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 37.0 2.81e-01 91.4% 54.5%
3o2zF00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 40.0 3.27e-01 88.6% 72.7%
2d42A01 2.170.15.10 Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › Proaerolysin, chain A, domain 3 0.53 40.0 2.65e-01 94.3% 40.8%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 38.0 3.21e-01 80.0% 40.8%
2icsA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.52 38.0 2.90e-01 85.7% 73.3%
1jzdC00 2.60.40.1250 Mainly Beta › Sandwich › Immunoglobulin-like › Thiol:disulfide interchange protein DsbD, N-terminal domain 0.52 42.0 2.98e-01 88.6% 27.1%
6kjuB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 2.72e-01 82.9% 24.8%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.50 35.0 2.34e-01 80.0% 23.7%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3607300 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.86 64.0 5.26e-01 80.0% 46.7%
5050651 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.83 65.0 4.66e-01 88.6% 70.0%
3588825 2004.1.1.552 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C 0.82 63.0 3.46e-01 82.9% 84.3%
4941378 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.82 61.0 4.43e-01 82.9% 30.5%
3511109 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.80 59.0 4.48e-01 82.9% 34.1%
3836840 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.80 65.0 4.33e-01 97.1% 23.4%
3324497 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.80 56.0 3.93e-01 77.1% 23.5%
3302022 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.78 56.0 4.03e-01 80.0% 27.0%
3364715 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.78 56.0 4.27e-01 82.9% 32.9%
4857423 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.76 60.0 4.48e-01 91.4% 34.0%
5044736 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.76 64.0 4.77e-01 100.0% 76.8%
3849127 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.76 58.0 5.21e-01 85.7% 60.0%
4565003 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.74 54.0 3.72e-01 82.9% 50.0%
3311895 11.1.5.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.74 61.0 4.36e-01 100.0% 81.7%
3343216 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.74 54.0 3.74e-01 77.1% 22.5%
4997180 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.73 60.0 4.10e-01 94.3% 59.2%
5030350 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.73 49.0 3.36e-01 71.4% 18.7%
3761389 10.32.1.20 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FBA 0.72 58.0 3.95e-01 88.6% 26.2%
3988073 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.71 55.0 3.64e-01 88.6% 21.3%
4424316 7503.1.1.2 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › ABC_trans_aux 0.71 52.0 3.48e-01 88.6% 20.6%
4947486 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 52.0 3.55e-01 85.7% 22.2%
3422969 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.70 51.0 3.58e-01 80.0% 23.5%
3580983 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 52.0 3.63e-01 85.7% 32.0%
5062579 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 49.0 3.93e-01 74.3% 34.7%
5048556 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 50.0 3.53e-01 80.0% 23.3%
3703249 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.69 51.0 3.54e-01 85.7% 23.4%
4962558 2484.1.1.22 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.68 50.0 3.17e-01 82.9% 15.7%
3605122 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.67 48.0 3.47e-01 85.7% 24.0%
5020005 3604.1.1.0 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.67 48.0 3.80e-01 77.1% 41.3%
3775519 109.27.1.1 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK 0.67 52.0 3.17e-01 94.3% 37.5%
5074066 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.66 50.0 3.44e-01 88.6% 22.1%
4979129 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.66 50.0 3.44e-01 91.4% 21.5%
5037264 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 48.0 3.85e-01 85.7% 40.0%
5061937 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 45.0 3.23e-01 85.7% 22.2%
3404839 385.1.1.0 few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines 0.63 46.0 3.30e-01 77.1% 23.5%
4190111 304.48.1.37 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.63 46.0 2.83e-01 82.9% 34.0%
3872696 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.63 45.0 4.27e-01 77.1% 60.0%
5052419 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 43.0 3.46e-01 74.3% 32.5%
4607431 11.1.1.1150 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › InlK_D3 0.62 44.0 3.22e-01 80.0% 27.4%
3212609 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.62 49.0 3.48e-01 82.9% 100.0%
3641065 11.1.1.36 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Rho_GDI 0.62 46.0 3.36e-01 91.4% 25.6%
4956920 11.1.1.284 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.61 47.0 3.61e-01 85.7% 32.2%
2390064 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.61 41.0 2.68e-01 71.4% 13.5%
3608759 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 42.0 3.37e-01 80.0% 32.9%
5004937 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.60 47.0 2.97e-01 100.0% 20.0%
3598322 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.59 42.0 2.88e-01 88.6% 17.9%
137752 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.59 41.0 2.92e-01 71.4% 24.6%
4344201 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.59 43.0 3.28e-01 85.7% 32.2%
None 0.58 43.0 2.53e-01 82.9% 10.7%
3971326 7503.1.1.2 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › ABC_trans_aux 0.58 42.0 2.87e-01 91.4% 18.3%
4996027 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.57 44.0 2.72e-01 88.6% 49.2%
3417907 304.48.1.37 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.57 42.0 2.62e-01 82.9% 33.3%
2581460 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.56 38.0 2.55e-01 91.4% 14.1%
3729142 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 41.0 2.59e-01 91.4% 57.4%
5004772 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 3.27e-01 74.3% 30.0%
2887049 54.1.1.1 beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix 0.53 39.0 2.97e-01 91.4% 28.8%
4858920 304.4.1.23 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dyp_perox_C 0.53 37.0 2.84e-01 82.9% 28.7%
3959244 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 36.0 2.97e-01 80.0% 31.1%
5038748 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.51 36.0 2.80e-01 88.6% 25.8%