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IMGVR_UViG_3300009671_000585-3300009671-Ga0123334_10048243

Arc-Vir

IMGVR_UViG_3300009671_000585-3300009671-Ga0123334_10048243

Identity

Kingdom:
archaea

Quality

90.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-86
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 42.0 2.66e-01 86.2% 13.2%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 44.0 3.43e-01 76.9% 36.5%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 36.0 3.77e-01 86.2% 62.3%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.61 37.0 3.20e-01 80.0% 38.8%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 44.0 3.56e-01 76.9% 66.4%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 41.0 4.31e-01 72.3% 89.7%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.58 45.0 2.96e-01 86.2% 85.9%
4okeA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 40.0 3.04e-01 72.3% 67.5%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.57 32.0 3.16e-01 72.3% 49.3%
5gvyA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.56 41.0 3.20e-01 78.5% 44.1%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.56 32.0 3.52e-01 72.3% 73.9%
4dovA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.56 39.0 3.06e-01 75.4% 45.2%
3jb9H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 35.0 3.43e-01 72.3% 56.6%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.55 41.0 3.28e-01 100.0% 39.4%
4iq0C02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 46.0 3.48e-01 100.0% 93.9%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 32.0 3.72e-01 80.0% 97.3%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 35.0 3.50e-01 72.3% 63.2%
5v6fA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.54 41.0 3.29e-01 84.6% 50.4%
1jeyA02 2.40.290.10 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.54 38.0 3.16e-01 76.9% 89.7%
4d8mA03 2.100.10.40 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › 0.53 43.0 3.13e-01 92.3% 49.7%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.52 38.0 2.59e-01 78.5% 38.4%
4q7fA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.52 44.0 2.95e-01 100.0% 98.3%
2zxqA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 39.0 2.64e-01 84.6% 86.9%
4ddnA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.51 39.0 3.03e-01 84.6% 40.9%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.51 37.0 3.19e-01 78.5% 51.3%
4ku0D00 2.60.200.60 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 41.0 3.75e-01 95.4% 83.3%
3m4aA03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.51 40.0 3.46e-01 92.3% 86.4%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 43.0 3.07e-01 100.0% 85.7%
4fxdA05 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.50 35.0 2.88e-01 72.3% 84.6%
3iteB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.50 38.0 2.45e-01 89.2% 85.8%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004322 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 48.0 4.34e-01 96.9% 54.4%
4625348 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.68 40.0 4.14e-01 86.2% 61.7%
5049738 2.1.1.94 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C 0.63 43.0 4.10e-01 90.8% 58.7%
3677493 76.1.1.2 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin 0.62 50.0 4.03e-01 87.7% 55.3%
None — 0.60 42.0 2.75e-01 75.4% 42.2%
4950462 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 36.0 3.75e-01 87.7% 65.0%
4989633 3891.1.1.0 ↗ a+b two layers › Archaea-specific ribosomal protein L46a › Archaea-specific ribosomal protein L46a › Archaea-specific ribosomal protein L46a 0.59 42.0 3.97e-01 78.5% 61.3%
3881013 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.59 47.0 3.47e-01 86.2% 43.8%
1684039 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.59 45.0 3.38e-01 84.6% 52.4%
3840090 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 50.0 3.54e-01 96.9% 45.4%
3438573 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.58 41.0 2.44e-01 75.4% 61.3%
3391731 5.1.3.175 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2, Kelch_3, Kelch_KLHDC2_KLHL20_DRC7 0.58 41.0 2.58e-01 76.9% 20.3%
None — 0.57 49.0 2.95e-01 100.0% 63.5%
5056578 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.56 41.0 2.66e-01 76.9% 31.2%
3632437 76.1.1.7 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › DUF7600 0.56 39.0 2.93e-01 73.8% 53.1%
4014196 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 46.0 2.84e-01 95.4% 61.3%
3873734 5.1.3.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.56 43.0 2.66e-01 84.6% 17.3%
4959275 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 39.0 2.88e-01 75.4% 38.9%
4079898 325.1.7.13 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › NusG_add 0.55 38.0 4.03e-01 72.3% 83.3%
3719862 5.1.3.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.55 42.0 2.68e-01 84.6% 20.0%
3343600 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.55 42.0 3.98e-01 86.2% 72.5%
4012140 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 39.0 2.33e-01 78.5% 61.3%
4938770 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.55 43.0 3.76e-01 86.2% 58.0%
None — 0.55 40.0 2.71e-01 81.5% 52.6%
3885864 5.1.3.135 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.53 40.0 2.59e-01 84.6% 20.3%
2142316 76.1.1.5 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Beta-prism_lec 0.53 41.0 3.27e-01 84.6% 51.1%
3184736 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.53 40.0 3.32e-01 81.5% 49.6%
1514577 2499.1.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.53 41.0 2.61e-01 89.2% 92.2%
4021710 2003.1.2.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N 0.53 37.0 2.43e-01 75.4% 38.6%
5046745 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 41.0 3.59e-01 96.9% 56.2%
3707549 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.51 42.0 2.64e-01 96.9% 18.6%
4489497 76.1.1.5 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Beta-prism_lec 0.50 39.0 3.10e-01 86.2% 52.1%
3716878 5.1.3.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.50 42.0 2.66e-01 100.0% 93.1%
3963647 2.8.1.0 ↗ beta barrels › OB-fold › mu transposases-C › mu transposases-C 0.50 30.0 2.94e-01 93.8% 50.7%