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IMGVR_UViG_3300009673_000044-3300009673-Ga0116185_100223418
Arc-VirIMGVR_UViG_3300009673_000044-3300009673-Ga0116185_100223418
Identity
- Kingdom:
- archaea
Quality
74.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-72
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wvvB01 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.89 | 70.0 | 6.87e-01 | 100.0% | 79.2% |
| 3wx7A02 | 2.10.10.90 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.86 | 77.0 | 5.83e-01 | 100.0% | 45.3% |
| 1aiwA00 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.84 | 64.0 | 5.72e-01 | 100.0% | 59.7% |
| 1goiB03 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.83 | 64.0 | 6.18e-01 | 100.0% | 74.5% |
| 2rtsA00 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.82 | 65.0 | 5.48e-01 | 100.0% | 53.4% |
| 1ed7A00 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.81 | 65.0 | 6.58e-01 | 95.6% | 88.9% |
| 1yueA02 | 2.10.10.40 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.72 | 61.0 | 5.58e-01 | 97.8% | 80.3% |
| 2pliA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.71 | 49.0 | 4.02e-01 | 100.0% | 39.3% |
| 4cp6A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.69 | 50.0 | 2.85e-01 | 95.6% | 8.6% |
| 2zo4A01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.67 | 50.0 | 3.07e-01 | 100.0% | 14.3% |
| 3prbA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.66 | 48.0 | 4.90e-01 | 95.6% | 79.5% |
| 2oaiA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.65 | 46.0 | 3.82e-01 | 100.0% | 42.5% |
| 4m1xD00 | 3.30.1360.240 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.64 | 50.0 | 4.29e-01 | 86.7% | 93.1% |
| 2nqwA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.63 | 44.0 | 3.63e-01 | 100.0% | 39.1% |
| 1vmeB01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.62 | 46.0 | 2.85e-01 | 97.8% | 14.3% |
| 6bogA02 | 2.30.30.930 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 45.0 | 4.12e-01 | 95.6% | 60.0% |
| 1k90A02 | 3.90.1760.10 | Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain | 0.61 | 42.0 | 2.81e-01 | 93.3% | 19.5% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 51.0 | 4.62e-01 | 100.0% | 69.4% |
| 5wcmA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.60 | 44.0 | 2.72e-01 | 100.0% | 13.7% |
| 4amcA01 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.59 | 43.0 | 4.28e-01 | 100.0% | 76.1% |
| 4wsqB00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.59 | 43.0 | 2.59e-01 | 93.3% | 11.3% |
| 2d9uA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 40.0 | 3.36e-01 | 88.9% | 41.9% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 41.0 | 3.49e-01 | 93.3% | 46.5% |
| 2m2lA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 39.0 | 3.49e-01 | 91.1% | 47.8% |
| 6n36A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.58 | 42.0 | 2.62e-01 | 100.0% | 13.6% |
| 2dyiA02 | 2.30.30.240 | Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain | 0.57 | 40.0 | 3.47e-01 | 91.1% | 47.9% |
| 4qucA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 38.0 | 3.58e-01 | 88.9% | 57.1% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 42.0 | 3.83e-01 | 100.0% | 61.5% |
| 3mtsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 36.0 | 3.26e-01 | 88.9% | 50.0% |
| 4emeC02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.53 | 45.0 | 3.16e-01 | 93.3% | 64.4% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 42.0 | 3.82e-01 | 100.0% | 63.8% |
| 1xe1A00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 46.0 | 3.69e-01 | 100.0% | 53.8% |
| 3bdiA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 43.0 | 2.83e-01 | 95.6% | 33.8% |
| 5tw4A02 | 2.30.140.20 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain | 0.52 | 40.0 | 3.64e-01 | 93.3% | 92.8% |
| 4q05A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 42.0 | 2.55e-01 | 93.3% | 20.5% |
| 4ge6A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 39.0 | 2.42e-01 | 100.0% | 12.9% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.51 | 40.0 | 2.53e-01 | 93.3% | 17.3% |
| 2rsxA00 | 3.10.450.420 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 41.0 | 2.83e-01 | 91.1% | 37.7% |
| 3nvnA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 40.0 | 2.40e-01 | 93.3% | 34.7% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1322862 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.94 | 78.0 | 7.66e-01 | 95.6% | 83.3% |
| 4110715 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.94 | 78.0 | 7.00e-01 | 95.6% | 67.8% |
| 3971347 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.93 | 79.0 | 7.17e-01 | 97.8% | 70.7% |
| 1322863 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.90 | 77.0 | 7.70e-01 | 97.8% | 89.1% |
| 3972100 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.89 | 72.0 | 6.27e-01 | 100.0% | 60.0% |
| 5026481 | 64.3.1.3 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 | 0.88 | 67.0 | 6.52e-01 | 100.0% | 74.0% |
| 4026053 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.86 | 68.0 | 7.15e-01 | 100.0% | 95.0% |
| 1694867 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.86 | 76.0 | 7.17e-01 | 97.8% | 81.1% |
| 2389402 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.84 | 65.0 | 6.14e-01 | 100.0% | 70.4% |
| 4009007 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.82 | 67.0 | 6.46e-01 | 97.8% | 80.0% |
| 4307941 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.82 | 73.0 | 6.68e-01 | 100.0% | 88.1% |
| 1291025 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.82 | 65.0 | 5.48e-01 | 100.0% | 53.4% |
| 4009008 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.80 | 72.0 | 6.76e-01 | 100.0% | 87.3% |
| 4444075 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.77 | 60.0 | 6.10e-01 | 97.8% | 88.4% |
| 4149799 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.73 | 63.0 | 6.18e-01 | 100.0% | 92.0% |
| 4009012 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.72 | 63.0 | 5.60e-01 | 100.0% | 70.3% |
| 4146937 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.63 | 53.0 | 4.70e-01 | 100.0% | 64.6% |
| 4086925 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.62 | 51.0 | 4.57e-01 | 100.0% | 64.6% |
| 3520811 | 4.8.1.2 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow | 0.62 | 41.0 | 3.48e-01 | 88.9% | 42.9% |
| 3619978 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.61 | 45.0 | 2.70e-01 | 100.0% | 10.4% |
| 3614553 | 3409.1.1.0 ↗ | a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain | 0.60 | 48.0 | 3.28e-01 | 93.3% | 22.1% |
| 3401325 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.60 | 39.0 | 3.41e-01 | 88.9% | 46.2% |
| 4419948 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.60 | 51.0 | 4.51e-01 | 100.0% | 66.2% |
| 3502375 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.60 | 47.0 | 4.78e-01 | 93.3% | 84.4% |
| 3639839 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.59 | 40.0 | 3.77e-01 | 88.9% | 58.5% |
| 3927367 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.59 | 39.0 | 3.39e-01 | 88.9% | 44.3% |
| 3552969 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.59 | 39.0 | 3.16e-01 | 88.9% | 36.5% |
| 3894324 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.59 | 39.0 | 3.45e-01 | 88.9% | 47.7% |
| 3270574 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.59 | 39.0 | 3.67e-01 | 88.9% | 56.4% |
| 3399675 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.59 | 39.0 | 3.42e-01 | 88.9% | 47.7% |
| 3470007 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.58 | 39.0 | 3.41e-01 | 88.9% | 47.7% |
| 3991082 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.58 | 38.0 | 3.40e-01 | 88.9% | 47.7% |
| 3732196 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.58 | 40.0 | 3.64e-01 | 91.1% | 53.3% |
| 3585503 | 4.8.1.2 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow | 0.58 | 37.0 | 3.51e-01 | 88.9% | 52.7% |
| 3402542 | 4.8.1.2 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow | 0.58 | 37.0 | 3.13e-01 | 88.9% | 40.0% |
| 3695974 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.57 | 38.0 | 3.62e-01 | 88.9% | 56.4% |
| 3933292 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.57 | 39.0 | 3.78e-01 | 88.9% | 62.0% |
| 3469035 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.57 | 40.0 | 3.64e-01 | 91.1% | 55.0% |
| 5052402 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.57 | 42.0 | 2.64e-01 | 100.0% | 14.0% |
| 4357452 | 4.8.1.29 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SH3_AEBP2_C | 0.55 | 37.0 | 2.87e-01 | 88.9% | 32.6% |
| 4155197 | 243.3.1.52 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 | 0.54 | 40.0 | 2.60e-01 | 93.3% | 18.4% |
| 3814728 | 376.1.2.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT | 0.54 | 47.0 | 4.26e-01 | 95.6% | 75.0% |
| 3570784 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.54 | 35.0 | 2.85e-01 | 88.9% | 34.4% |
| 3358839 | 1.1.7.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M18 | 0.54 | 45.0 | 3.00e-01 | 93.3% | 55.3% |
| 3928860 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.53 | 37.0 | 3.40e-01 | 88.9% | 51.7% |
| 3992008 | 1.1.7.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M18 | 0.52 | 43.0 | 3.00e-01 | 93.3% | 62.0% |
| 5062486 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.51 | 43.0 | 3.09e-01 | 100.0% | 58.6% |