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IMGVR_UViG_3300009673_000082-3300009673-Ga0116185_10050862

Arc-Vir

IMGVR_UViG_3300009673_000082-3300009673-Ga0116185_10050862

Quality

86.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 29-81
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zuoA06 2.30.30.560 Mainly Beta › Roll › SH3 type barrels. › Major vault protein, N-terminal structural repeat domain 0.63 54.0 5.55e-01 98.1% 100.0%
7clyA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.63 54.0 3.81e-01 100.0% 54.5%
2qqkA02 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.61 54.0 4.19e-01 100.0% 68.7%
2h5fB00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.59 43.0 3.89e-01 92.5% 56.8%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.58 47.0 3.76e-01 100.0% 68.5%
3zjaA01 2.60.40.1890 Mainly Beta › Sandwich › Immunoglobulin-like › PCu(A)C copper chaperone 0.58 47.0 3.85e-01 94.3% 72.6%
1y7xA02 2.30.30.550 Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat 0.58 48.0 4.74e-01 98.1% 94.6%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 45.0 3.61e-01 100.0% 41.0%
2ogjA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.57 38.0 3.10e-01 71.7% 53.0%
2outA01 3.40.5.80 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.57 45.0 4.46e-01 90.6% 91.2%
4knuA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.56 40.0 2.98e-01 100.0% 27.0%
3gbwA00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.56 44.0 3.34e-01 98.1% 80.7%
2n99A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.55 45.0 4.01e-01 92.5% 65.8%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.54 46.0 3.69e-01 100.0% 58.6%
3wcyA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 47.0 4.06e-01 100.0% 65.1%
3n6yA01 2.60.40.2390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 3.61e-01 96.2% 62.5%
4gwmA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.32e-01 100.0% 40.2%
1qhoA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 45.0 3.68e-01 100.0% 64.8%
4nn5C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 48.0 3.87e-01 100.0% 54.5%
1jyhA00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.53 40.0 3.00e-01 88.7% 53.5%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.18e-01 100.0% 71.2%
5eo9B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.68e-01 98.1% 81.1%
5u47A01 2.20.70.70 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.53 29.0 3.31e-01 94.3% 81.2%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 3.65e-01 100.0% 72.1%
5j11C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 3.72e-01 100.0% 66.3%
2re9A01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 3.12e-01 98.1% 72.6%
3lqmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 45.0 3.65e-01 100.0% 65.7%
4liqE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.64e-01 100.0% 73.0%
5nfiB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.31e-01 100.0% 54.1%
1yllA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 3.62e-01 100.0% 68.5%
2yq2A01 2.60.320.20 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › Pestivirus envelope glycoprotein E2, domain A 0.51 42.0 3.67e-01 98.1% 79.5%
1y7xA01 2.30.30.550 Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat 0.51 39.0 4.06e-01 86.8% 100.0%
2erjB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 43.0 3.52e-01 100.0% 60.6%
1wtjA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.50 39.0 2.90e-01 100.0% 53.9%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 42.0 4.10e-01 100.0% 87.1%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
376763 3529.1.1.2 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault_2 0.66 56.0 5.73e-01 98.1% 98.0%
3593782 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.64 52.0 5.40e-01 100.0% 98.0%
3714918 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.63 55.0 5.52e-01 100.0% 98.2%
3705484 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.62 54.0 5.37e-01 100.0% 98.2%
3265780 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.62 54.0 5.23e-01 100.0% 96.7%
3595897 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.62 53.0 5.25e-01 100.0% 100.0%
3606398 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.61 53.0 5.30e-01 100.0% 98.2%
3593797 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.61 52.0 5.21e-01 100.0% 98.2%
3266009 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.61 52.0 5.16e-01 100.0% 100.0%
3600188 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.59 50.0 5.04e-01 100.0% 96.4%
292719 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.58 48.0 4.72e-01 98.1% 93.0%
4929162 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.58 49.0 3.76e-01 100.0% 43.8%
3714926 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.57 45.0 4.66e-01 92.5% 100.0%
3912609 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 49.0 3.61e-01 100.0% 57.2%
5007276 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 47.0 3.57e-01 100.0% 42.1%
3939103 11.2.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › YEATS 0.55 47.0 3.51e-01 100.0% 38.6%
3592726 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 3.66e-01 98.1% 65.2%
4012587 10.32.1.232 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4360 0.54 47.0 3.32e-01 100.0% 43.5%
3475789 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 47.0 3.68e-01 100.0% 64.3%
3249243 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 47.0 3.66e-01 100.0% 96.6%
3623934 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 48.0 3.56e-01 100.0% 43.1%
5033996 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 46.0 3.00e-01 100.0% 32.7%
3325089 10.10.1.1 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.52 41.0 3.11e-01 90.6% 79.3%
5061804 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.54e-01 100.0% 65.5%
3879556 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.51 42.0 3.03e-01 100.0% 68.4%
3854881 3769.1.1.0 0.51 43.0 4.02e-01 92.5% 76.9%
4968130 11.1.1.1424 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 0.51 44.0 3.59e-01 100.0% 65.7%
5043699 3509.1.1.0 a+b complex topology › RapA C-terminal domain › RapA C-terminal domain › RapA C-terminal domain 0.51 41.0 2.80e-01 88.7% 51.6%
3327977 10.10.1.1 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.50 41.0 3.15e-01 92.5% 77.7%
3413442 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.50 40.0 3.51e-01 92.5% 58.8%
3704245 11.1.1.60 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Vps26 0.50 35.0 2.62e-01 75.5% 71.3%
185779 3566.1.1.1 beta sandwiches › hypothetical protein BA_2335 › hypothetical protein BA_2335 › hypothetical protein BA_2335 › BA_2335-like 0.50 42.0 4.09e-01 100.0% 87.1%
3254120 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.50 42.0 3.13e-01 100.0% 79.4%
3408652 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 3.14e-01 100.0% 46.3%
4960460 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 39.0 3.06e-01 86.8% 83.3%
4969640 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 3.30e-01 100.0% 64.6%
D2 medium residues 82-136
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1winA01 3.30.479.30 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain 0.78 68.0 5.35e-01 100.0% 47.0%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.68 37.0 3.28e-01 100.0% 37.7%
2wliA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.62 39.0 2.81e-01 80.0% 21.1%
4bwiB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 41.0 2.90e-01 76.4% 38.4%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.57 38.0 3.02e-01 100.0% 32.8%
3bjsA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 36.0 2.86e-01 100.0% 30.8%
5awwY00 1.10.3370.10 Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain 0.55 41.0 2.50e-01 85.5% 94.1%
3i1iB01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 47.0 2.85e-01 100.0% 37.2%
2xssA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 39.0 2.93e-01 81.8% 58.3%
3ddcB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 45.0 3.45e-01 98.2% 72.2%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.53 45.0 2.90e-01 100.0% 92.9%
2f4lA02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 36.0 3.95e-01 70.9% 100.0%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.51 43.0 3.92e-01 100.0% 74.7%
2i9dA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.50 41.0 2.86e-01 98.2% 77.5%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4490995 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.88 80.0 5.00e-01 100.0% 21.1%
3482847 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.87 80.0 5.98e-01 100.0% 44.8%
3517068 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.76 50.0 4.73e-01 100.0% 56.9%
3892842 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 44.0 4.20e-01 100.0% 58.5%
3614143 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.63 44.0 3.44e-01 90.9% 33.1%
3185783 323.1.1.20 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding,ACAS_N 0.62 45.0 2.93e-01 80.0% 88.1%
3734626 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.62 39.0 2.63e-01 72.7% 16.4%
4126255 4967.1.1.25 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2+MatK_N 0.61 44.0 2.81e-01 78.2% 34.5%
4979109 2006.1.4.56 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF5615 0.60 47.0 3.62e-01 100.0% 38.7%
3587376 386.1.1.344 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Arm-DNA-bind_4 0.59 34.0 3.46e-01 70.9% 50.9%
3200147 5104.1.1.3 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.59 50.0 3.56e-01 100.0% 87.8%
3982740 5086.1.1.190 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP 0.58 43.0 2.96e-01 81.8% 23.0%
4674811 304.48.1.17 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B_2 0.56 40.0 2.49e-01 76.4% 13.1%
4022589 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.56 42.0 2.81e-01 81.8% 79.6%
5083964 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 35.0 2.91e-01 100.0% 35.0%
5019602 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.55 44.0 3.57e-01 96.4% 88.3%
3624550 6043.1.1.4 a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.55 46.0 3.44e-01 98.2% 78.7%
3405436 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.65e-01 100.0% 46.1%
5070432 314.1.1.11 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.54 39.0 2.74e-01 78.2% 48.9%
2505866 1.2.1.4 beta barrels › cradle loop barrel › Capsid protein protrusion (P) domain › Capsid protein protrusion (P) domain › Calici_coat, Calici_coat_C 0.54 39.0 2.93e-01 100.0% 29.7%
5029815 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.53 36.0 2.44e-01 76.4% 18.1%
4803119 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.53 38.0 3.21e-01 80.0% 65.4%
3733648 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 2.61e-01 78.2% 27.7%
3693663 2004.1.1.14 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.52 47.0 2.80e-01 100.0% 77.5%
3174953 69.1.1.2 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.51 39.0 2.75e-01 98.2% 21.4%
2050561 2007.1.14.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.51 37.0 2.79e-01 81.8% 92.8%
5075171 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.50 44.0 3.70e-01 100.0% 64.2%