←Back to structures
IMGVR_UViG_3300009673_000588-3300009673-Ga0116185_10083622
Arc-VirIMGVR_UViG_3300009673_000588-3300009673-Ga0116185_10083622
Identity
- Kingdom:
- archaea
Quality
78.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-88
Domain cluster:
representative
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lnnA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.71 | 47.0 | 4.49e-01 | 100.0% | 58.1% |
| 5lpeB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 43.0 | 4.06e-01 | 100.0% | 54.8% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.67 | 50.0 | 4.31e-01 | 100.0% | 50.8% |
| 5c94A00 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.66 | 42.0 | 3.70e-01 | 100.0% | 43.1% |
| 4f0qD01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.65 | 57.0 | 4.01e-01 | 100.0% | 38.4% |
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.65 | 42.0 | 4.50e-01 | 100.0% | 76.5% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.63 | 48.0 | 4.11e-01 | 100.0% | 51.2% |
| 4fvdA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 32.0 | 3.05e-01 | 100.0% | 39.4% |
| 3f1sB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 44.0 | 4.13e-01 | 100.0% | 61.3% |
| 2xrcC04 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 40.0 | 3.04e-01 | 100.0% | 28.7% |
| 7pzoA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 44.0 | 4.10e-01 | 100.0% | 62.5% |
| 2wzpP01 | 2.40.30.210 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.60 | 49.0 | 4.44e-01 | 100.0% | 65.1% |
| 1orfA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 43.0 | 3.89e-01 | 100.0% | 57.1% |
| 1a7sA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 42.0 | 3.83e-01 | 100.0% | 56.2% |
| 1ntpA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 42.0 | 3.85e-01 | 100.0% | 57.3% |
| 1a5iA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 44.0 | 3.88e-01 | 100.0% | 54.2% |
| 3tk9A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 42.0 | 3.77e-01 | 100.0% | 56.1% |
| 4h4fA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 43.0 | 3.82e-01 | 100.0% | 56.4% |
| 3dfjA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 44.0 | 3.89e-01 | 100.0% | 56.6% |
| 2aiqA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 41.0 | 3.62e-01 | 100.0% | 53.1% |
| 6r2wH02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 43.0 | 3.83e-01 | 100.0% | 58.2% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 41.0 | 3.41e-01 | 100.0% | 42.2% |
| 1faxA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 41.0 | 3.71e-01 | 100.0% | 57.0% |
| 1ym0A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 41.0 | 3.72e-01 | 100.0% | 56.2% |
| 2f91A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 43.0 | 3.84e-01 | 100.0% | 58.4% |
| 5fcrC02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 42.0 | 3.82e-01 | 100.0% | 59.8% |
| 1ekbB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 41.0 | 3.76e-01 | 100.0% | 58.7% |
| 1fiwA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 45.0 | 3.89e-01 | 100.0% | 57.5% |
| 5dj7A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 39.0 | 3.56e-01 | 100.0% | 54.6% |
| 4lk4A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 39.0 | 3.74e-01 | 100.0% | 62.5% |
| 2b9lA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 43.0 | 3.45e-01 | 100.0% | 42.7% |
| 1ltoA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 39.0 | 3.57e-01 | 100.0% | 55.0% |
| 1kcvL02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 33.0 | 3.10e-01 | 100.0% | 45.6% |
| 1v8cA02 | 3.30.1370.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain | 0.54 | 39.0 | 3.96e-01 | 100.0% | 75.0% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 38.0 | 3.57e-01 | 100.0% | 62.5% |
| 2r0lA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 39.0 | 3.50e-01 | 100.0% | 55.8% |
| 6ruiB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.52 | 49.0 | 4.08e-01 | 100.0% | 81.0% |
| 5b08A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 37.0 | 3.43e-01 | 100.0% | 58.0% |
| 2yq1C00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.52 | 33.0 | 2.87e-01 | 100.0% | 38.2% |
| 2ypyA00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.52 | 32.0 | 2.73e-01 | 100.0% | 35.8% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.52 | 39.0 | 3.51e-01 | 100.0% | 58.5% |
| 1dx5M02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 43.0 | 3.77e-01 | 100.0% | 60.5% |
| 5f8zA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 38.0 | 3.48e-01 | 100.0% | 57.1% |
| 2jdjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 36.0 | 3.27e-01 | 100.0% | 54.8% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 41.0 | 3.43e-01 | 88.5% | 51.9% |
| 1p3cA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 37.0 | 3.40e-01 | 100.0% | 57.3% |
| 2ldyA01 | 3.30.70.1820 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › L1 transposable element, RRM domain | 0.50 | 37.0 | 3.48e-01 | 100.0% | 64.3% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3943282 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.70 | 53.0 | 4.61e-01 | 100.0% | 52.5% |
| 4189243 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.68 | 51.0 | 4.27e-01 | 100.0% | 47.7% |
| 3622133 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.66 | 50.0 | 3.52e-01 | 100.0% | 25.6% |
| 3977123 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.66 | 56.0 | 4.38e-01 | 100.0% | 45.0% |
| 3693412 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 47.0 | 4.14e-01 | 100.0% | 50.0% |
| 3973696 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 49.0 | 4.20e-01 | 100.0% | 50.4% |
| 3397229 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.63 | 44.0 | 3.11e-01 | 100.0% | 24.3% |
| 3504078 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.62 | 49.0 | 3.43e-01 | 100.0% | 25.5% |
| 4952429 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.62 | 48.0 | 4.41e-01 | 100.0% | 65.0% |
| 4202541 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.60 | 49.0 | 4.34e-01 | 100.0% | 60.9% |
| 3967199 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 44.0 | 4.05e-01 | 100.0% | 60.0% |
| 3980535 | 1.1.13.51 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU | 0.59 | 51.0 | 4.17e-01 | 100.0% | 53.3% |
| 5040464 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 40.0 | 3.78e-01 | 100.0% | 56.8% |
| 3183073 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.59 | 54.0 | 3.64e-01 | 100.0% | 38.5% |
| 3409540 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.59 | 42.0 | 2.91e-01 | 100.0% | 23.7% |
| 4189226 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.59 | 43.0 | 3.05e-01 | 100.0% | 26.1% |
| None | — | 0.58 | 44.0 | 3.04e-01 | 100.0% | 23.3% | |
| 3406384 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.58 | 45.0 | 3.12e-01 | 100.0% | 25.3% |
| None | — | 0.58 | 43.0 | 3.05e-01 | 100.0% | 26.0% | |
| 3416162 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.58 | 42.0 | 2.91e-01 | 100.0% | 22.4% |
| 3409616 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.58 | 43.0 | 3.04e-01 | 100.0% | 25.3% |
| 4641660 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.57 | 44.0 | 3.06e-01 | 100.0% | 24.6% |
| 3481883 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 41.0 | 3.43e-01 | 100.0% | 43.7% |
| 5004177 | 304.124.1.3 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 | 0.57 | 44.0 | 3.82e-01 | 100.0% | 52.8% |
| 3248732 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 53.0 | 4.44e-01 | 100.0% | 63.2% |
| 4532481 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.57 | 38.0 | 2.62e-01 | 100.0% | 18.6% |
| 3760665 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.56 | 41.0 | 2.89e-01 | 100.0% | 23.5% |
| 4379611 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.56 | 50.0 | 3.60e-01 | 100.0% | 45.2% |
| 3411242 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.56 | 43.0 | 3.00e-01 | 100.0% | 24.8% |
| 5082575 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.56 | 41.0 | 4.14e-01 | 100.0% | 75.0% |
| 3754112 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.56 | 41.0 | 2.87e-01 | 100.0% | 23.1% |
| 3467043 | 3468.1.1.0 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain | 0.56 | 50.0 | 3.72e-01 | 100.0% | 48.5% |
| 3585212 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.56 | 42.0 | 3.10e-01 | 100.0% | 29.8% |
| 3415234 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.56 | 38.0 | 2.71e-01 | 100.0% | 21.3% |
| 3565221 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.55 | 42.0 | 2.94e-01 | 100.0% | 24.6% |
| 5038472 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 45.0 | 3.99e-01 | 100.0% | 61.8% |
| 5033816 | 256.1.1.4 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › DUF4177 | 0.55 | 37.0 | 4.07e-01 | 100.0% | 84.4% |
| 3502149 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.55 | 45.0 | 3.09e-01 | 100.0% | 25.9% |
| 4953386 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.55 | 48.0 | 4.03e-01 | 100.0% | 62.1% |
| 3966825 | 1.1.13.51 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU | 0.54 | 49.0 | 4.26e-01 | 100.0% | 67.5% |
| 4250509 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.54 | 43.0 | 2.99e-01 | 100.0% | 24.6% |
| 3518700 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.54 | 44.0 | 3.24e-01 | 100.0% | 33.3% |
| 3616946 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.54 | 50.0 | 4.45e-01 | 100.0% | 91.4% |
| 3944239 | 1.1.13.51 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU | 0.53 | 44.0 | 4.06e-01 | 100.0% | 69.5% |
| 3587262 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.53 | 42.0 | 3.88e-01 | 100.0% | 66.7% |
| 4191050 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.52 | 48.0 | 4.20e-01 | 100.0% | 93.9% |
| 3615101 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.52 | 44.0 | 2.98e-01 | 100.0% | 25.0% |
| 4316388 | 309.1.2.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain | 0.51 | 44.0 | 3.67e-01 | 100.0% | 76.7% |
| 3472247 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.51 | 42.0 | 2.89e-01 | 100.0% | 24.3% |
| 3768334 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.50 | 39.0 | 2.78e-01 | 100.0% | 25.7% |