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IMGVR_UViG_3300009673_000588-3300009673-Ga0116185_10083624
Arc-VirIMGVR_UViG_3300009673_000588-3300009673-Ga0116185_10083624
Identity
- Kingdom:
- archaea
Quality
92.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-96
Domain cluster:
rep: ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00132__D29-77_93-127
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04717.19 best | Phage_base_V | 35.5 | 1.40e-08 | 89.5% | 89.3% |
D2
high
residues 101-173
Domain cluster:
rep: JQ362498.1__AFF28257.1__PAU_259__00252__D88-157
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pqhA01 | 2.20.220.20 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › | 0.84 | 64.0 | 7.01e-01 | 86.3% | 96.7% |
| 2fn0B00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.70 | 49.0 | 3.01e-01 | 72.6% | 83.7% |
| 4by2B00 | 2.60.450.20 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › | 0.70 | 63.0 | 4.91e-01 | 100.0% | 73.5% |
| 4a0tA01 | 6.20.80.10 | Special › Other non-globular › Glycosyl hydrolase fold › | 0.66 | 48.0 | 5.23e-01 | 78.1% | 91.8% |
| 4ld1A00 | 2.60.450.20 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › | 0.65 | 58.0 | 4.51e-01 | 100.0% | 52.2% |
| 4rs6A01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.63 | 50.0 | 4.32e-01 | 87.7% | 55.9% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.62 | 48.0 | 4.21e-01 | 83.6% | 64.2% |
| 4nkbB02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.62 | 42.0 | 3.97e-01 | 79.5% | 57.8% |
| 1kb0A01 | 2.140.10.10 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily | 0.61 | 53.0 | 3.20e-01 | 100.0% | 24.7% |
| 2ogqA01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.61 | 49.0 | 4.15e-01 | 90.4% | 51.6% |
| 6g6qA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 50.0 | 4.04e-01 | 93.2% | 59.0% |
| 1flgA00 | 2.140.10.10 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily | 0.60 | 52.0 | 3.12e-01 | 100.0% | 25.1% |
| 1a0rB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 51.0 | 3.33e-01 | 98.6% | 36.9% |
| 2ymsC00 | 2.40.10.480 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.59 | 42.0 | 4.21e-01 | 75.3% | 100.0% |
| 4nsxA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 49.0 | 3.29e-01 | 97.3% | 47.0% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.59 | 45.0 | 4.02e-01 | 83.6% | 63.8% |
| 4cvbA00 | 2.140.10.10 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily | 0.58 | 49.0 | 2.99e-01 | 100.0% | 32.4% |
| 1xipA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 50.0 | 3.23e-01 | 100.0% | 37.1% |
| 2ovrB02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 50.0 | 3.29e-01 | 98.6% | 46.6% |
| 4hdjA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 47.0 | 3.14e-01 | 97.3% | 42.8% |
| 8eg0B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 49.0 | 3.20e-01 | 100.0% | 38.0% |
| 4j0wA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 50.0 | 3.30e-01 | 100.0% | 52.9% |
| 4a2lF02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 47.0 | 3.15e-01 | 95.9% | 28.8% |
| 1a2pA00 | 3.10.450.30 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases | 0.57 | 38.0 | 3.46e-01 | 71.2% | 80.6% |
| 1rwiA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.57 | 48.0 | 3.38e-01 | 98.6% | 48.4% |
| 3pvnA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 40.0 | 2.96e-01 | 75.3% | 52.4% |
| 1pguA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 47.0 | 3.28e-01 | 97.3% | 49.8% |
| 3tc9A02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.56 | 46.0 | 3.07e-01 | 93.2% | 33.1% |
| 1lbvA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.56 | 49.0 | 4.03e-01 | 98.6% | 65.2% |
| 2ymsA00 | 2.40.128.630 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 46.0 | 3.98e-01 | 95.9% | 74.2% |
| 2ymsB00 | 2.40.10.480 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.56 | 39.0 | 3.91e-01 | 72.6% | 100.0% |
| 4tkcA00 | 2.90.10.10 | Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain | 0.56 | 41.0 | 3.47e-01 | 86.3% | 46.6% |
| 5ic7A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 47.0 | 3.15e-01 | 100.0% | 40.9% |
| 2aq5A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 47.0 | 3.13e-01 | 98.6% | 47.2% |
| 4hadB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 45.0 | 3.35e-01 | 90.4% | 60.5% |
| 3cwxA00 | 3.40.1420.20 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD | 0.55 | 48.0 | 4.09e-01 | 100.0% | 96.8% |
| 2byoA00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.54 | 40.0 | 3.10e-01 | 80.8% | 40.4% |
| 5m8cB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 47.0 | 3.08e-01 | 98.6% | 38.8% |
| 2w18A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 45.0 | 3.01e-01 | 93.2% | 41.5% |
| 3ow8C00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 45.0 | 3.11e-01 | 97.3% | 44.0% |
| 3amkA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 40.0 | 3.59e-01 | 79.5% | 70.0% |
| 4bt2A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.53 | 37.0 | 3.27e-01 | 74.0% | 55.3% |
| 1xeaA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 42.0 | 3.31e-01 | 100.0% | 49.0% |
| 3havA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 40.0 | 3.78e-01 | 94.5% | 71.9% |
| 2d0bA01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.51 | 35.0 | 3.28e-01 | 78.1% | 58.4% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 36.0 | 3.74e-01 | 78.1% | 100.0% |
| 4twlA00 | 3.10.200.10 | Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase | 0.50 | 41.0 | 2.87e-01 | 89.0% | 81.2% |
| 6u5uG07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.50 | 43.0 | 3.62e-01 | 100.0% | 100.0% |
| 4msxA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 42.0 | 2.81e-01 | 93.2% | 40.4% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3231343 | 77.1.1.10 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › PF28998 | 0.79 | 64.0 | 5.21e-01 | 86.3% | 52.3% |
| 3577311 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.75 | 51.0 | 4.63e-01 | 71.2% | 100.0% |
| 4609923 | 77.3.1.4 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 | 0.73 | 61.0 | 4.94e-01 | 90.4% | 51.9% |
| 4247302 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.72 | 49.0 | 4.61e-01 | 76.7% | 57.8% |
| 3578232 | 77.3.1.4 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 | 0.70 | 62.0 | 4.32e-01 | 95.9% | 35.6% |
| 3788978 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.70 | 49.0 | 4.12e-01 | 72.6% | 70.0% |
| 3711004 | 77.3.1.1 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › Tcp10_C | 0.69 | 59.0 | 4.91e-01 | 94.5% | 68.8% |
| 3928477 | 77.3.1.4 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 | 0.68 | 58.0 | 4.27e-01 | 97.3% | 35.4% |
| 3931562 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.67 | 59.0 | 4.15e-01 | 97.3% | 70.2% |
| 3256681 | 77.3.1.0 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain | 0.67 | 59.0 | 3.76e-01 | 100.0% | 20.0% |
| 3764875 | 77.3.1.1 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › Tcp10_C | 0.67 | 57.0 | 4.25e-01 | 95.9% | 46.3% |
| 3781789 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.66 | 51.0 | 3.97e-01 | 82.2% | 81.4% |
| 4566387 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.66 | 46.0 | 4.70e-01 | 76.7% | 75.7% |
| 4030652 | 77.3.1.0 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain | 0.66 | 58.0 | 4.63e-01 | 100.0% | 88.7% |
| 5043213 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.65 | 53.0 | 3.85e-01 | 100.0% | 32.5% |
| 3600232 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.65 | 57.0 | 4.16e-01 | 98.6% | 70.5% |
| 3242234 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.64 | 51.0 | 3.08e-01 | 89.0% | 12.1% |
| 4865033 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.64 | 48.0 | 4.07e-01 | 84.9% | 47.6% |
| 3717674 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.64 | 49.0 | 4.64e-01 | 87.7% | 67.8% |
| 3936855 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.63 | 55.0 | 3.90e-01 | 97.3% | 69.8% |
| 3741303 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.63 | 49.0 | 4.67e-01 | 87.7% | 71.8% |
| 3736231 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.63 | 47.0 | 3.97e-01 | 80.8% | 68.8% |
| 3246494 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.63 | 50.0 | 3.49e-01 | 87.7% | 26.1% |
| 4302456 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.62 | 44.0 | 4.15e-01 | 78.1% | 61.1% |
| 3741285 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.61 | 47.0 | 4.39e-01 | 84.9% | 66.3% |
| 3663326 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.61 | 49.0 | 4.34e-01 | 87.7% | 62.9% |
| 3214309 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.60 | 51.0 | 3.32e-01 | 97.3% | 35.2% |
| 3996597 | 5.1.4.308 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, LLGL | 0.60 | 50.0 | 3.29e-01 | 94.5% | 29.7% |
| 4029129 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 49.0 | 3.27e-01 | 94.5% | 26.5% |
| 3628520 | 5.1.4.308 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, LLGL | 0.60 | 50.0 | 2.87e-01 | 95.9% | 17.6% |
| 3841271 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.59 | 50.0 | 3.58e-01 | 93.2% | 38.6% |
| 3188256 | 12.3.1.28 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_92N | 0.59 | 50.0 | 3.43e-01 | 94.5% | 90.9% |
| 3533928 | 5.1.4.171 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › HELP+Beta-prop_EML | 0.59 | 49.0 | 3.14e-01 | 91.8% | 32.5% |
| 4120507 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.59 | 47.0 | 4.39e-01 | 89.0% | 74.7% |
| 185629 | 79.1.1.8 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › gp37_trimer | 0.59 | 47.0 | 4.32e-01 | 86.3% | 68.1% |
| 3390301 | 5.1.4.102 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_3 | 0.59 | 50.0 | 3.40e-01 | 98.6% | 48.1% |
| 3707091 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.59 | 50.0 | 3.82e-01 | 95.9% | 67.4% |
| 3611830 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 49.0 | 2.98e-01 | 93.2% | 29.3% |
| 3900097 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.57 | 49.0 | 4.05e-01 | 97.3% | 68.1% |
| 4016523 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 49.0 | 3.22e-01 | 100.0% | 37.6% |
| 5003963 | 5.1.11.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A | 0.56 | 47.0 | 3.04e-01 | 100.0% | 40.7% |
| 4891006 | 5.1.5.230 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › CFAP43_N | 0.56 | 46.0 | 3.09e-01 | 93.2% | 38.5% |
| 3413033 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.56 | 41.0 | 3.58e-01 | 80.8% | 76.7% |
| 3216286 | 5.1.3.164 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_Rol-3 | 0.54 | 44.0 | 3.22e-01 | 93.2% | 44.1% |
| 3935617 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 44.0 | 2.98e-01 | 100.0% | 37.9% |
| 3823160 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.53 | 43.0 | 2.83e-01 | 89.0% | 51.7% |
| 3421076 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.53 | 43.0 | 2.94e-01 | 93.2% | 34.4% |
| 3634343 | 5.1.5.93 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N | 0.53 | 43.0 | 2.69e-01 | 94.5% | 29.8% |
| 3763123 | 5.1.4.371 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Frtz | 0.53 | 45.0 | 2.87e-01 | 100.0% | 54.8% |
| 4076042 | 5.1.5.64 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DCAF17 | 0.52 | 43.0 | 2.77e-01 | 100.0% | 33.2% |
| 3820829 | 5.1.5.66 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 | 0.51 | 36.0 | 2.50e-01 | 78.1% | 32.1% |
| 3433410 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.51 | 41.0 | 2.90e-01 | 98.6% | 53.6% |
| 3465957 | 5.1.4.504 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › b-prop_At3g26010-like | 0.51 | 42.0 | 2.76e-01 | 100.0% | 35.4% |
| 3825538 | 5.3.1.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin | 0.50 | 36.0 | 3.02e-01 | 75.3% | 73.4% |
D3
high
residues 201-258
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l37A00 | 6.10.250.890 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.69 | 47.0 | 5.21e-01 | 77.6% | 97.7% |
| 2wdqD00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.67 | 55.0 | 4.65e-01 | 96.6% | 59.0% |
| 3bk2A03 | 3.10.20.580 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.66 | 48.0 | 4.12e-01 | 79.3% | 49.5% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.65 | 43.0 | 3.86e-01 | 75.9% | 46.5% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.64 | 52.0 | 4.75e-01 | 96.6% | 67.1% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.64 | 48.0 | 4.67e-01 | 94.8% | 71.6% |
| 2yv9B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.63 | 49.0 | 3.82e-01 | 86.2% | 44.8% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.63 | 51.0 | 4.28e-01 | 94.8% | 65.5% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 49.0 | 4.59e-01 | 87.9% | 75.7% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 51.0 | 5.00e-01 | 96.6% | 89.2% |
| 2aj6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 42.0 | 3.36e-01 | 72.4% | 34.2% |
| 2oauA01 | 1.10.287.1260 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 50.0 | 4.30e-01 | 96.6% | 58.8% |
| 5l3wA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.62 | 43.0 | 3.92e-01 | 79.3% | 52.4% |
| 2c5qA00 | 3.50.30.40 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like | 0.61 | 45.0 | 3.05e-01 | 81.0% | 99.6% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 45.0 | 4.08e-01 | 89.7% | 56.6% |
| 3wgtA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 40.0 | 2.83e-01 | 91.4% | 20.7% |
| 4ywoA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 52.0 | 3.56e-01 | 100.0% | 27.4% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 48.0 | 4.42e-01 | 96.6% | 70.5% |
| 2d6yA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 48.0 | 3.45e-01 | 94.8% | 29.6% |
| 1wleA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.58 | 49.0 | 4.04e-01 | 98.3% | 65.8% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 48.0 | 4.43e-01 | 94.8% | 78.9% |
| 2ddmB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.58 | 45.0 | 2.95e-01 | 89.7% | 89.3% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.57 | 41.0 | 3.93e-01 | 86.2% | 66.2% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.57 | 40.0 | 4.28e-01 | 74.1% | 95.6% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 41.0 | 4.02e-01 | 79.3% | 75.4% |
| 1w5sA01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 39.0 | 3.52e-01 | 74.1% | 51.1% |
| 3u7eB01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.57 | 39.0 | 2.83e-01 | 89.7% | 21.9% |
| 1jlcB03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.56 | 38.0 | 2.98e-01 | 70.7% | 33.1% |
| 2ktmA00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.56 | 42.0 | 4.03e-01 | 84.5% | 70.6% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 44.0 | 3.74e-01 | 91.4% | 70.2% |
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.56 | 39.0 | 3.83e-01 | 77.6% | 70.8% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 46.0 | 4.18e-01 | 98.3% | 73.5% |
| 1is8A01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.55 | 45.0 | 4.48e-01 | 91.4% | 91.7% |
| 2jxuA00 | 1.10.3680.10 | Mainly Alpha › Orthogonal Bundle › TerB-like › TerB-like | 0.55 | 40.0 | 3.03e-01 | 81.0% | 51.0% |
| 4l8eA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 43.0 | 3.66e-01 | 94.8% | 62.7% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 42.0 | 4.03e-01 | 89.7% | 71.8% |
| 3c1dA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 35.0 | 3.85e-01 | 77.6% | 82.6% |
| 1vryA00 | 6.10.250.2810 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.53 | 37.0 | 3.73e-01 | 79.3% | 72.1% |
| 3ckcA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 41.0 | 3.09e-01 | 100.0% | 42.4% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4944477 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.72 | 58.0 | 4.04e-01 | 87.9% | 29.2% |
| 5074758 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.72 | 56.0 | 5.03e-01 | 91.4% | 61.3% |
| 3451236 | 397.4.1.3 ↗ | few secondary structure elements › Toxic hairpin › VhTI-like › VhTI-like › PF31266 | 0.72 | 50.0 | 5.50e-01 | 74.1% | 95.6% |
| 4987734 | 4070.1.1.0 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like | 0.71 | 60.0 | 4.25e-01 | 93.1% | 56.5% |
| 3398929 | 5041.1.1.32 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › TMEM141 | 0.69 | 53.0 | 4.70e-01 | 86.2% | 93.3% |
| 4991198 | 2.1.1.359 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HupF_HypC | 0.69 | 59.0 | 4.69e-01 | 94.8% | 57.4% |
| 5016694 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.68 | 57.0 | 4.27e-01 | 94.8% | 72.7% |
| 5060609 | 632.8.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 | 0.68 | 51.0 | 4.74e-01 | 81.0% | 69.3% |
| 5022668 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.67 | 56.0 | 4.28e-01 | 96.6% | 43.6% |
| 5024787 | 7064.1.1.0 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 | 0.67 | 55.0 | 4.15e-01 | 94.8% | 93.3% |
| 3570117 | 375.6.1.2 ↗ | few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like › PF31275 | 0.67 | 57.0 | 5.66e-01 | 96.6% | 95.0% |
| 5014612 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.67 | 55.0 | 4.08e-01 | 94.8% | 72.3% |
| 3971686 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.66 | 54.0 | 4.17e-01 | 94.8% | 79.3% |
| 3810884 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.66 | 55.0 | 4.19e-01 | 96.6% | 40.0% |
| 4031352 | 6026.1.1.43 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › DUF1024 | 0.65 | 54.0 | 4.84e-01 | 94.8% | 66.7% |
| 3721541 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.65 | 53.0 | 4.55e-01 | 94.8% | 59.0% |
| 3972074 | 3236.2.1.2 ↗ | alpha complex topology › Cation-proton antiporter › Sodium-dependent citrate symporter › Sodium-dependent citrate symporter › AbrB | 0.65 | 50.0 | 3.11e-01 | 84.5% | 14.4% |
| 3903917 | 5058.1.1.17 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › NRN1 | 0.64 | 49.0 | 4.45e-01 | 94.8% | 60.0% |
| 4963338 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.64 | 52.0 | 5.19e-01 | 93.1% | 90.0% |
| 4012810 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.64 | 52.0 | 4.71e-01 | 96.6% | 68.2% |
| 3545962 | 192.8.1.247 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Erf4 | 0.64 | 52.0 | 4.10e-01 | 94.8% | 53.1% |
| 1790834 | 3086.1.1.1 ↗ | alpha bundles › Diacylglycerol kinase (DAGK) › Diacylglycerol kinase (DAGK) › Diacylglycerol kinase (DAGK) › DAGK_prokar | 0.64 | 52.0 | 4.68e-01 | 94.8% | 75.0% |
| 5071140 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.63 | 52.0 | 3.97e-01 | 96.6% | 39.3% |
| None | — | 0.63 | 50.0 | 2.97e-01 | 93.1% | 87.6% | |
| 3183479 | 3758.1.1.47 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › PigN | 0.63 | 49.0 | 3.61e-01 | 96.6% | 30.6% |
| 3741742 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.62 | 52.0 | 3.41e-01 | 96.6% | 29.8% |
| 3416663 | 4336.2.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 | 0.62 | 48.0 | 4.18e-01 | 86.2% | 54.4% |
| 3482541 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.62 | 53.0 | 3.45e-01 | 96.6% | 22.6% |
| 3991663 | 4336.2.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 | 0.62 | 47.0 | 4.06e-01 | 84.5% | 54.7% |
| 3705380 | 857.1.1.19 ↗ | a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › Ax_dynein_light | 0.61 | 45.0 | 3.68e-01 | 81.0% | 41.7% |
| 4318142 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.61 | 44.0 | 3.37e-01 | 77.6% | 36.4% |
| 2983215 | 1131.1.1.1 ↗ | extended segments › Mitochondrial complex I, B14.5b subunit › Mitochondrial complex I, B14.5b subunit › Mitochondrial complex I, B14.5b subunit › NDUF_C2 | 0.59 | 47.0 | 3.95e-01 | 96.6% | 58.3% |
| 4023307 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.58 | 41.0 | 3.88e-01 | 84.5% | 60.0% |
| 2893266 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.57 | 45.0 | 4.07e-01 | 94.8% | 59.8% |
| 5058202 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.57 | 46.0 | 3.21e-01 | 98.3% | 46.1% |
| 3912433 | 603.1.1.5 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N | 0.55 | 46.0 | 3.58e-01 | 94.8% | 63.0% |
| 3846228 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.55 | 42.0 | 3.69e-01 | 84.5% | 62.2% |
| 4635506 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.55 | 45.0 | 3.56e-01 | 98.3% | 82.9% |
| 3823984 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.54 | 45.0 | 3.81e-01 | 94.8% | 100.0% |
| 4097875 | 3712.1.1.2 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › DUF412 | 0.54 | 42.0 | 3.72e-01 | 94.8% | 73.0% |
| 4337032 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.54 | 44.0 | 3.53e-01 | 98.3% | 83.5% |
| 5032477 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.53 | 43.0 | 3.65e-01 | 98.3% | 88.2% |
| 4060628 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.53 | 43.0 | 3.48e-01 | 100.0% | 84.6% |
| 3797012 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.52 | 39.0 | 3.00e-01 | 86.2% | 91.6% |