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IMGVR_UViG_3300009674_000354-3300009674-Ga0116173_10132532

Arc-Vir

IMGVR_UViG_3300009674_000354-3300009674-Ga0116173_10132532

Identity

Kingdom:
archaea

Quality

86.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-124
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vfrA04 3.30.70.2520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 26.0 2.94e-01 100.0% 52.1%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.56 40.0 3.08e-01 99.2% 34.6%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.56 32.0 3.80e-01 85.6% 82.5%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.56 42.0 3.66e-01 77.1% 87.5%
5bmnA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.56 32.0 3.72e-01 86.4% 78.3%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.56 43.0 3.83e-01 81.4% 77.9%
3b7xA00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 31.0 3.12e-01 77.1% 57.3%
1dj7B00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.52 25.0 3.08e-01 72.0% 71.2%
4f54A00 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 46.0 4.01e-01 100.0% 97.8%
4dipH00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 33.0 3.37e-01 70.3% 64.7%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 36.0 3.26e-01 73.7% 78.3%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 36.0 3.66e-01 77.1% 74.6%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030357 1.1.7.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.61 30.0 3.40e-01 83.1% 60.0%
3504130 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 48.0 4.88e-01 88.1% 95.7%
3785219 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.58 42.0 3.18e-01 100.0% 32.1%
5053192 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 44.0 4.24e-01 100.0% 72.4%
3281942 222.1.1.24 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › AfsA 0.57 41.0 3.56e-01 73.7% 76.0%
3297150 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 37.0 3.93e-01 72.9% 77.0%
3946057 304.102.1.1 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.56 36.0 2.96e-01 84.7% 34.5%
3495172 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 49.0 4.37e-01 100.0% 87.3%
3481772 331.9.1.4 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla 0.54 40.0 4.03e-01 86.4% 74.8%
3939257 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.53 38.0 3.02e-01 77.1% 87.4%
3270697 223.2.1.25 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Avl9 0.52 46.0 4.16e-01 100.0% 69.7%
3062826 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.52 43.0 3.54e-01 91.5% 83.2%
4873215 1.1.13.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.52 35.0 3.39e-01 86.4% 57.9%
3586856 2004.1.1.514 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_29, SbcC_Walker_B 0.51 41.0 2.88e-01 87.3% 34.5%
4116939 2004.1.1.525 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_27, SbcC_Walker_B 0.51 42.0 2.80e-01 89.8% 27.9%
3751112 223.2.1.29 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 0.51 39.0 3.69e-01 100.0% 65.3%
3478405 3338.2.1.0 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.51 40.0 3.87e-01 83.1% 76.9%
4139591 223.2.1.32 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.51 44.0 4.00e-01 100.0% 70.0%
4025469 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.51 44.0 3.61e-01 94.9% 60.5%
3316409 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.51 44.0 3.60e-01 95.8% 52.3%
3626286 223.1.1.29 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.50 42.0 3.99e-01 91.5% 100.0%
3531180 223.2.1.25 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Avl9 0.50 45.0 3.89e-01 100.0% 73.0%