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IMGVR_UViG_3300009674_000458-3300009674-Ga0116173_101658317
Arc-VirIMGVR_UViG_3300009674_000458-3300009674-Ga0116173_101658317
Identity
- Kingdom:
- archaea
Quality
80.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-67
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12544.14 best | LAM_C | 77.2 | 1.70e-21 | 88.7% | 39.4% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3npfB01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.75 | 33.0 | 3.25e-01 | 74.2% | 39.4% |
| 3j7yD02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 38.0 | 3.45e-01 | 80.6% | 38.3% |
| 1ml8A01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.70 | 33.0 | 4.16e-01 | 87.1% | 76.5% |
| 1whzA00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.68 | 32.0 | 3.14e-01 | 74.2% | 39.1% |
| 3oymA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 33.0 | 3.16e-01 | 74.2% | 44.3% |
| 1jegA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 31.0 | 3.23e-01 | 74.2% | 48.3% |
| 2dl5A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 31.0 | 2.91e-01 | 74.2% | 37.2% |
| 4oonA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 40.0 | 3.37e-01 | 96.8% | 39.4% |
| 1f44A01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.58 | 45.0 | 3.26e-01 | 88.7% | 68.0% |
| 4gnxA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 35.0 | 2.86e-01 | 80.6% | 37.0% |
| 2in5A00 | 2.40.360.10 | Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like | 0.54 | 37.0 | 2.63e-01 | 71.0% | 36.9% |
| 2yf0A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 30.0 | 2.70e-01 | 74.2% | 37.9% |
| 3d6wB01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 27.0 | 2.67e-01 | 80.6% | 40.0% |
| 4ci8A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 44.0 | 2.87e-01 | 98.4% | 64.5% |
| 3npfA03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.52 | 39.0 | 2.97e-01 | 83.9% | 72.7% |
| 3rp7A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 32.0 | 2.35e-01 | 82.3% | 22.6% |
| 1y13A00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.52 | 39.0 | 2.93e-01 | 82.3% | 61.3% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 33.0 | 3.51e-01 | 98.4% | 76.4% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4959771 | 2002.1.1.450 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › LAM_C | 0.94 | 87.0 | 5.11e-01 | 100.0% | 14.6% |
| 4075436 | 2002.1.1.124 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,LAM_C | 0.94 | 87.0 | 5.12e-01 | 100.0% | 14.9% |
| 5063085 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.91 | 83.0 | 5.23e-01 | 96.8% | 22.2% |
| 3931369 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.79 | 35.0 | 3.94e-01 | 74.2% | 54.0% |
| 3241817 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 34.0 | 3.54e-01 | 74.2% | 46.7% |
| 3616007 | 4.1.1.233 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N | 0.75 | 35.0 | 3.72e-01 | 74.2% | 50.9% |
| 4113537 | 2.1.1.327 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27401 | 0.73 | 33.0 | 3.27e-01 | 74.2% | 40.0% |
| 2581368 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.70 | 33.0 | 4.00e-01 | 91.9% | 69.2% |
| 3441677 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 32.0 | 3.53e-01 | 74.2% | 56.0% |
| 3478898 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 33.0 | 3.24e-01 | 74.2% | 46.2% |
| 5049906 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.63 | 32.0 | 3.25e-01 | 74.2% | 50.0% |
| 4013462 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.63 | 31.0 | 2.00e-01 | 82.3% | 9.3% |
| 3901051 | 391.1.2.11 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_2nd | 0.56 | 32.0 | 3.89e-01 | 91.9% | 90.0% |
| 4027502 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 33.0 | 3.27e-01 | 80.6% | 56.9% |
| 25624 | 4.1.1.45 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF903 | 0.52 | 34.0 | 3.69e-01 | 93.5% | 80.8% |
| 3168091 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.52 | 41.0 | 2.93e-01 | 98.4% | 34.3% |