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IMGVR_UViG_3300009674_000561-3300009674-Ga0116173_10061667
Arc-VirIMGVR_UViG_3300009674_000561-3300009674-Ga0116173_10061667
Identity
- Kingdom:
- archaea
Quality
79.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-208_222-275
Domain cluster:
rep: IMGVR_UViG_3300025682_000646-3300025682-Ga0209718_10056841__D30-255
D2
high
residues 870-1012
Domain cluster:
rep: IMGVR_UViG_3300009696_000618-3300009696-Ga0116177_100045221__D13-172
D3
medium
residues 762-869_1026-1041_1099-1140
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l33A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.65 | 27.0 | 3.59e-01 | 83.1% | 69.2% |
| 2dixA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 28.0 | 3.92e-01 | 81.9% | 84.6% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 24.0 | 3.74e-01 | 85.5% | 86.2% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 24.0 | 3.76e-01 | 81.9% | 92.1% |
| 2mdrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 28.0 | 3.54e-01 | 82.5% | 71.3% |
| 1imuA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.61 | 33.0 | 4.01e-01 | 93.4% | 79.4% |
| 2awnC03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 22.0 | 3.72e-01 | 78.3% | 94.8% |
| 1di2A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 27.0 | 3.94e-01 | 81.9% | 97.1% |
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 27.0 | 3.90e-01 | 81.9% | 94.4% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 24.0 | 3.62e-01 | 87.3% | 87.0% |
| 1zc0A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.60 | 34.0 | 2.79e-01 | 73.5% | 32.5% |
| 7r97A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 26.0 | 3.92e-01 | 81.9% | 98.5% |
| 1uhzA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 28.0 | 3.73e-01 | 85.5% | 85.4% |
| 2l3rA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 24.0 | 3.56e-01 | 78.3% | 91.8% |
| 3htyA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 31.0 | 3.90e-01 | 88.6% | 94.7% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 28.0 | 3.55e-01 | 87.3% | 81.4% |
| 2k4vA00 | 3.30.160.370 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 | 0.55 | 30.0 | 3.36e-01 | 92.8% | 67.2% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 23.0 | 3.29e-01 | 77.1% | 85.5% |
| 2oq1A03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 30.0 | 3.68e-01 | 90.4% | 91.0% |
| 1y0gA00 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.52 | 39.0 | 3.92e-01 | 77.7% | 78.1% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 22.0 | 3.17e-01 | 82.5% | 86.7% |
| 3u1wA02 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 22.0 | 3.15e-01 | 83.7% | 93.9% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3636596 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 22.0 | 3.81e-01 | 70.5% | 96.0% |
| 3580028 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.63 | 33.0 | 3.16e-01 | 83.7% | 43.7% |
| 3887511 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.62 | 27.0 | 3.43e-01 | 82.5% | 66.0% |
| 4567415 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.62 | 27.0 | 3.43e-01 | 82.5% | 66.0% |
| 4507276 | 2.4.1.11 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 | 0.61 | 25.0 | 3.14e-01 | 86.1% | 60.2% |
| 3832602 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.59 | 31.0 | 3.72e-01 | 90.4% | 75.5% |
| 3513352 | 241.15.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 | 0.59 | 40.0 | 4.62e-01 | 95.2% | 98.3% |
| 3749345 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 27.0 | 3.78e-01 | 84.3% | 88.7% |
| 4954298 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.58 | 30.0 | 3.76e-01 | 75.3% | 82.1% |
| 4997059 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.58 | 24.0 | 3.52e-01 | 83.7% | 85.3% |
| 4399266 | 2.4.1.12 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal | 0.57 | 26.0 | 3.12e-01 | 86.1% | 60.0% |
| 3928223 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.56 | 28.0 | 3.62e-01 | 81.9% | 84.4% |
| 3507402 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.56 | 35.0 | 2.80e-01 | 74.7% | 33.0% |
| 5073192 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.56 | 25.0 | 3.53e-01 | 73.5% | 96.9% |
| 3934999 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.56 | 34.0 | 2.78e-01 | 72.3% | 33.9% |
| 3494972 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.55 | 36.0 | 2.87e-01 | 72.3% | 34.2% |
| 3598064 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.55 | 31.0 | 3.44e-01 | 86.7% | 68.8% |
| 3742723 | 192.15.1.113 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › SPC25 | 0.54 | 34.0 | 4.10e-01 | 92.2% | 100.0% |
| 3942912 | 4.1.1.323 ↗ | beta barrels › SH3 › SH3 › SH3 › WYL | 0.54 | 24.0 | 3.25e-01 | 84.9% | 78.8% |
| 3801135 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.54 | 35.0 | 2.85e-01 | 73.5% | 37.4% |
| 3978997 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.53 | 24.0 | 3.13e-01 | 84.9% | 71.6% |
| 3645842 | 4.1.1.162 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF502 | 0.53 | 22.0 | 3.08e-01 | 74.7% | 77.5% |
| 1281147 | 9.23.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_3 | 0.53 | 30.0 | 3.94e-01 | 78.3% | 98.9% |
| 3863194 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.52 | 31.0 | 3.43e-01 | 88.0% | 72.3% |
| 3505248 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.52 | 28.0 | 3.50e-01 | 83.1% | 86.0% |
| 3842363 | 1.1.5.76 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT | 0.52 | 25.0 | 3.03e-01 | 84.3% | 67.3% |
| 3770803 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.51 | 25.0 | 3.02e-01 | 84.9% | 68.2% |
D4
medium
residues 1042-1098
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 54.0 | 4.45e-01 | 87.7% | 98.1% |
| 3b4sA01 | 1.10.287.790 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › luxt domain from vibrio parahaemolyticus | 0.60 | 37.0 | 3.98e-01 | 91.2% | 73.5% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.58 | 37.0 | 3.77e-01 | 87.7% | 67.3% |
| 4ev6A03 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.56 | 46.0 | 4.63e-01 | 96.5% | 100.0% |
| 1fafA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.54 | 39.0 | 3.61e-01 | 80.7% | 62.0% |
| 3m9lA02 | 1.10.260.80 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › | 0.54 | 42.0 | 4.37e-01 | 100.0% | 98.0% |
| 3g36B00 | 1.20.890.10 | Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain | 0.54 | 41.0 | 4.30e-01 | 96.5% | 96.1% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4013657 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.55 | 41.0 | 3.20e-01 | 84.2% | 40.0% |
| 4039612 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.53 | 39.0 | 2.50e-01 | 86.0% | 76.2% |
| 145835 | 101.1.1.34 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HPD | 0.52 | 45.0 | 3.31e-01 | 100.0% | 84.0% |
| 3213947 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.52 | 43.0 | 3.39e-01 | 98.2% | 85.9% |
| 3960775 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.51 | 35.0 | 2.61e-01 | 91.2% | 25.6% |
| 4220383 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.51 | 36.0 | 2.65e-01 | 93.0% | 27.0% |