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IMGVR_UViG_3300009674_000599-3300009674-Ga0116173_100374218

Arc-Vir

IMGVR_UViG_3300009674_000599-3300009674-Ga0116173_100374218

Quality

69.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-74
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.87 51.0 5.15e-01 78.1% 59.7%
4iw7A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.75 50.0 4.26e-01 98.6% 43.5%
6gdxA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 51.0 4.45e-01 71.2% 51.4%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 50.0 4.38e-01 71.2% 52.8%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 45.0 4.17e-01 71.2% 50.0%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 45.0 4.23e-01 71.2% 56.2%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.65 48.0 3.64e-01 80.8% 62.2%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.65 56.0 4.95e-01 100.0% 67.0%
4k05A02 3.90.1150.140 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.64 50.0 3.95e-01 98.6% 40.3%
3o4fH02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 53.0 3.83e-01 94.5% 76.1%
2hfvA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.62 42.0 4.20e-01 71.2% 67.5%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 47.0 4.53e-01 95.9% 72.1%
2e0zA01 3.30.2400.20 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › 0.61 43.0 3.87e-01 75.3% 72.0%
4lrjA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 47.0 4.78e-01 97.3% 83.6%
3pcoB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.61 42.0 3.92e-01 72.6% 61.7%
1nbeB01 3.30.70.140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aspartate carbamoyltransferase regulatory subunit, N-terminal domain 0.60 41.0 3.87e-01 78.1% 57.0%
4fprB00 3.30.70.2910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 41.0 3.46e-01 72.6% 61.7%
3c6kB03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 49.0 3.70e-01 94.5% 96.3%
1b7yB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.58 40.0 3.86e-01 72.6% 65.1%
4m5dA05 3.30.70.3030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 42.0 3.47e-01 76.7% 59.4%
8a9xA01 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.57 44.0 4.44e-01 100.0% 82.7%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 52.0 3.72e-01 100.0% 75.2%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.57 40.0 3.89e-01 74.0% 92.7%
2c7rA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 48.0 3.50e-01 97.3% 72.5%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.55 43.0 3.34e-01 100.0% 35.3%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 41.0 3.93e-01 83.6% 67.4%
2ftrA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 38.0 3.44e-01 72.6% 58.3%
3dxqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 38.0 3.73e-01 100.0% 66.3%
3jwhA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 45.0 3.39e-01 94.5% 95.8%
4dkjA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 47.0 3.14e-01 97.3% 74.0%
5wt3A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 43.0 3.39e-01 94.5% 91.2%
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.35e-01 72.6% 59.8%
4o4bB00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.53 41.0 2.94e-01 100.0% 25.6%
3rcyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 42.0 3.51e-01 90.4% 78.7%
6fnnB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 41.0 3.40e-01 87.7% 61.8%
1sqhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 46.0 3.57e-01 98.6% 81.3%
4xrpC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 44.0 3.39e-01 94.5% 98.9%
2q83B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 42.0 3.88e-01 95.9% 67.7%
3d3sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 44.0 3.50e-01 100.0% 83.6%
5xoyB02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 37.0 3.30e-01 91.8% 53.3%
1vybA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.51 40.0 2.94e-01 91.8% 83.1%
3b8pA00 3.30.1890.10 Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like 0.51 42.0 3.02e-01 90.4% 66.2%
1ybtB00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.50 44.0 3.37e-01 98.6% 44.8%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.50 43.0 4.11e-01 100.0% 91.1%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963926 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.87 55.0 5.37e-01 72.6% 59.5%
2559787 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.74 50.0 4.81e-01 79.5% 61.7%
4998393 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.74 57.0 4.88e-01 100.0% 53.6%
5029542 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.72 54.0 4.80e-01 100.0% 56.2%
4975577 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.71 56.0 4.13e-01 100.0% 34.9%
4971395 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.70 55.0 4.97e-01 100.0% 63.2%
5030215 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.70 55.0 4.73e-01 100.0% 55.5%
5027690 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.70 53.0 4.66e-01 100.0% 54.5%
4979991 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.69 53.0 4.78e-01 100.0% 60.0%
4993856 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.69 56.0 4.93e-01 100.0% 61.0%
4464568 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.69 53.0 4.74e-01 100.0% 60.0%
4976516 304.19.1.0 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain 0.68 45.0 4.23e-01 72.6% 55.6%
4080330 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.68 54.0 4.82e-01 100.0% 62.0%
4940452 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.67 54.0 4.57e-01 100.0% 53.9%
4142447 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.67 54.0 4.82e-01 100.0% 62.0%
4979626 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.67 56.0 4.54e-01 100.0% 50.0%
4277614 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.67 55.0 4.69e-01 100.0% 57.3%
5031636 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.67 58.0 4.84e-01 100.0% 56.7%
3603235 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.64 51.0 4.60e-01 100.0% 62.0%
5030783 242.1.1.3 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › Hom_end 0.64 49.0 4.53e-01 100.0% 63.2%
4993583 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.64 58.0 4.88e-01 100.0% 70.0%
4972477 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.64 49.0 4.36e-01 100.0% 58.1%
3225950 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.64 45.0 3.91e-01 76.7% 77.5%
5032338 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.63 54.0 4.54e-01 100.0% 56.7%
4212314 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.63 50.0 4.48e-01 100.0% 62.0%
4665957 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.62 51.0 4.54e-01 100.0% 62.9%
4941329 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.62 51.0 4.58e-01 100.0% 65.0%
4629783 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.61 56.0 4.67e-01 100.0% 73.3%
4977674 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 56.0 3.90e-01 100.0% 73.6%
3512301 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.61 48.0 3.14e-01 86.3% 50.9%
4162122 2006.1.1.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP 0.61 48.0 3.29e-01 100.0% 23.2%
3649210 101.1.9.2 alpha arrays › HTH › HTH › Putative DNA-binding domain › SRP19 0.60 46.0 4.18e-01 100.0% 61.0%
4032112 2006.1.1.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP 0.60 50.0 3.40e-01 100.0% 25.3%
3887399 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.60 52.0 3.47e-01 100.0% 58.1%
3265906 3012.1.1.4 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 0.60 53.0 4.59e-01 100.0% 82.6%
5048120 2003.1.5.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.60 49.0 3.26e-01 95.9% 97.1%
5066391 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 53.0 4.22e-01 100.0% 54.3%
3703618 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.57 52.0 4.72e-01 100.0% 92.6%
3971260 3268.1.1.1 a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › XdhC_CoxI 0.57 33.0 2.90e-01 100.0% 36.4%
4440183 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.57 52.0 4.50e-01 100.0% 68.2%
5014341 2003.1.5.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 0.56 45.0 3.10e-01 90.4% 58.9%
3520543 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.56 41.0 3.85e-01 87.7% 63.3%
3992985 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.56 38.0 3.69e-01 71.2% 62.4%
3290078 321.4.1.0 a+b two layers › Glutamine synthetase-like › Methyltransferase type 12 N-terminal domain › Methyltransferase type 12 N-terminal domain 0.55 43.0 2.67e-01 87.7% 37.1%
5004725 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.54 37.0 3.32e-01 71.2% 96.2%
4512937 2003.1.5.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB 0.54 43.0 3.27e-01 94.5% 74.3%
3520570 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.53 45.0 4.03e-01 97.3% 93.6%
3411079 3369.1.1.1 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.53 40.0 3.11e-01 83.6% 89.4%
1551357 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.53 44.0 3.38e-01 94.5% 97.2%
3877290 101.1.2.699 alpha arrays › HTH › HTH › winged helix domain › KCTD_C 0.52 47.0 4.02e-01 100.0% 91.3%
3230092 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.52 39.0 3.18e-01 82.2% 82.0%
3853184 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.52 36.0 2.90e-01 72.6% 68.4%
4950106 312.1.1.0 a+b three layers › HIT-like › HIT-related › HIT-related 0.52 45.0 3.42e-01 95.9% 49.4%
3915011 389.1.1.7 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA 0.51 42.0 3.36e-01 94.5% 66.9%
4142057 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 43.0 3.37e-01 100.0% 73.3%
327528 328.1.1.2 a+b two layers › IF3-like › AlbA-like › AlbA-like › SpoVS 0.50 43.0 4.11e-01 100.0% 91.1%