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IMGVR_UViG_3300009675_000105-3300009675-Ga0116149_10085931
Arc-VirIMGVR_UViG_3300009675_000105-3300009675-Ga0116149_10085931
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-102_117-169
Domain cluster:
rep: IMGVR_UViG_3300001446_000118-3300001446-JGI20130J15133_100131816__D5-70_91-146_246-277
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6f1uK02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.51 | 37.0 | 3.82e-01 | 74.8% | 87.6% |
ECOD (1)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4508852 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.56 | 37.0 | 4.19e-01 | 77.4% | 89.6% |
D2
medium
residues 170-330
Domain cluster:
rep: DQ340064.2__ABC61276.1__X__00022__D272-425
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pk8A00 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.84 | 47.0 | 6.14e-01 | 88.2% | 94.7% |
| 1ohgA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.78 | 49.0 | 6.08e-01 | 95.0% | 98.1% |
| 2e0zC03 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.78 | 46.0 | 5.93e-01 | 95.7% | 100.0% |
| 3dktA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.77 | 46.0 | 5.82e-01 | 96.3% | 100.0% |
| 3bjqA00 | 3.90.1690.10 | Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain | 0.72 | 67.0 | 5.40e-01 | 100.0% | 60.1% |
| 1yueA03 | 3.30.2320.40 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › | 0.64 | 45.0 | 5.21e-01 | 95.0% | 96.7% |
| 1dbfA00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.57 | 38.0 | 4.18e-01 | 97.5% | 84.3% |
| 7p8na01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 24.0 | 3.22e-01 | 75.2% | 77.1% |
| 3i9v202 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 25.0 | 3.05e-01 | 75.2% | 66.0% |
| 5d4wA04 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 25.0 | 3.24e-01 | 82.6% | 76.6% |
| 3t5sA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.53 | 26.0 | 3.19e-01 | 88.8% | 74.2% |
| 1vk3A02 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.51 | 36.0 | 3.89e-01 | 90.7% | 84.4% |
| 1senA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 28.0 | 3.08e-01 | 75.2% | 64.9% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 11367 | 2485.3.1.6 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › ENCP4 | 0.84 | 47.0 | 6.14e-01 | 88.2% | 94.7% |
| 2988313 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.79 | 72.0 | 5.94e-01 | 100.0% | 57.0% |
| 5011908 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.79 | 66.0 | 5.64e-01 | 100.0% | 57.9% |
| 3075730 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.79 | 74.0 | 5.75e-01 | 100.0% | 59.6% |
| 194954 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.78 | 66.0 | 5.75e-01 | 99.4% | 60.2% |
| 4929755 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.78 | 74.0 | 6.04e-01 | 100.0% | 62.5% |
| 3603036 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.78 | 66.0 | 5.56e-01 | 100.0% | 56.1% |
| 2651377 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.74 | 70.0 | 5.61e-01 | 100.0% | 58.6% |
| 2989363 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.74 | 70.0 | 5.50e-01 | 100.0% | 61.0% |
| 2639625 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.72 | 68.0 | 5.51e-01 | 100.0% | 56.8% |
| 2989289 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.72 | 68.0 | 5.27e-01 | 100.0% | 60.7% |
| 2989356 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.71 | 66.0 | 5.34e-01 | 100.0% | 60.9% |
| 2989372 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.70 | 66.0 | 5.27e-01 | 100.0% | 58.9% |
| 2538948 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.69 | 64.0 | 5.16e-01 | 100.0% | 56.5% |
| 5083777 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.69 | 65.0 | 5.16e-01 | 100.0% | 53.3% |
| 4884207 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.68 | 64.0 | 5.18e-01 | 100.0% | 57.6% |
| 2989340 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.68 | 63.0 | 5.01e-01 | 100.0% | 61.3% |
| 3977525 | 2485.3.1.4 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_P2 | 0.63 | 58.0 | 4.55e-01 | 100.0% | 58.6% |
| 3588084 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.63 | 58.0 | 4.68e-01 | 100.0% | 58.7% |
| 4967548 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.50 | 31.0 | 3.62e-01 | 90.7% | 88.2% |