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IMGVR_UViG_3300009676_000665-3300009676-Ga0116187_10160026
Arc-VirIMGVR_UViG_3300009676_000665-3300009676-Ga0116187_10160026
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-151_202-221
Domain cluster:
rep: IMGVR_UViG_2529293100_000004-2529293100-2531221071__D80-181
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00535.33 best | Glycos_transf_2 | 40.1 | 5.30e-10 | 49.7% | 38.1% |
| PF00535.33 | Glycos_transf_2 | 43.2 | 5.80e-11 | 43.9% | 28.0% |
| PF13641.13 | Glyco_tranf_2_3 | 29.0 | 1.20e-06 | 42.1% | 27.0% |
D2
medium
residues 152-201
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sovA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.63 | 52.0 | 3.62e-01 | 94.0% | 99.4% |
| 1hyhC02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.61 | 50.0 | 3.59e-01 | 94.0% | 34.4% |
| 5bjuA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 47.0 | 2.92e-01 | 94.0% | 36.4% |
| 2g5fB00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.57 | 50.0 | 2.91e-01 | 100.0% | 21.2% |
| 4g6tB00 | 6.10.20.120 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › | 0.55 | 40.0 | 3.67e-01 | 80.0% | 70.4% |
| 5k9fA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 41.0 | 3.38e-01 | 86.0% | 68.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3959171 | 4029.1.1.0 ↗ | a+b duplicates or obligate multimers › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like | 0.72 | 39.0 | 4.27e-01 | 90.0% | 65.0% |
| 3454770 | 109.4.1.621 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3 | 0.62 | 49.0 | 3.05e-01 | 88.0% | 16.8% |
| 3248524 | 7018.1.1.1 ↗ | few secondary structure elements › gp76 helical domain › gp76 helical domain › gp76 helical domain › FAM91_C | 0.61 | 50.0 | 3.47e-01 | 92.0% | 42.3% |
| 4403478 | 298.1.1.8 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C | 0.60 | 46.0 | 2.98e-01 | 86.0% | 82.1% |
| 3228071 | 209.1.1.14 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › PF29411 | 0.58 | 43.0 | 3.00e-01 | 84.0% | 36.7% |
| 5035290 | 7570.1.1.0 ↗ | a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain | 0.57 | 39.0 | 2.88e-01 | 72.0% | 94.1% |
| 3361836 | 2003.1.2.9 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GDI | 0.51 | 42.0 | 3.02e-01 | 100.0% | 77.1% |