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IMGVR_UViG_3300009680_000868-3300009680-Ga0123335_10138959

Arc-Vir

IMGVR_UViG_3300009680_000868-3300009680-Ga0123335_10138959

Quality

85.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-92
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gytA00 1.20.120.740 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695 0.64 46.0 3.73e-01 96.6% 37.9%
1ixrA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 28.0 3.20e-01 84.1% 54.0%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 37.0 3.56e-01 98.9% 51.4%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.58 41.0 4.28e-01 87.5% 82.3%
1qviA01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.57 40.0 3.64e-01 70.5% 77.4%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 36.0 3.38e-01 76.1% 51.4%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.56 34.0 3.90e-01 95.5% 93.0%
5z7qA00 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.55 43.0 3.54e-01 87.5% 67.0%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.54 45.0 3.36e-01 94.3% 61.5%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 45.0 4.00e-01 92.0% 92.7%
3cwzB01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.53 42.0 3.65e-01 87.5% 82.2%
4r5qA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.53 38.0 2.97e-01 77.3% 84.2%
2jugA01 1.10.10.1830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Non-ribosomal peptide synthase, adenylation domain 0.52 31.0 3.62e-01 98.9% 94.5%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 3.98e-01 92.0% 91.4%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 36.0 3.41e-01 76.1% 60.4%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.51 37.0 3.46e-01 77.3% 66.7%
1xjhA00 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.51 31.0 3.49e-01 94.3% 85.5%
4ofzA01 1.20.58.1800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 38.0 3.60e-01 85.2% 64.6%
1dvkA00 1.20.940.10 Mainly Alpha › Up-down Bundle › RNA Binding Protein, Prp18; Chain A › Functional domain of the splicing factor Prp18 0.51 43.0 3.68e-01 100.0% 56.4%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.50 40.0 3.71e-01 89.8% 85.5%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.50 33.0 2.75e-01 86.4% 38.2%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5073433 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.85 78.0 7.03e-01 100.0% 74.8%
3442404 192.11.1.0 alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB 0.66 48.0 3.54e-01 98.9% 29.9%
3666685 192.11.1.2 alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › CysS_C 0.66 48.0 3.44e-01 98.9% 27.5%
3361362 140.1.1.21 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e, CysS_C 0.62 48.0 3.44e-01 81.8% 33.1%
4214015 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.62 55.0 5.08e-01 100.0% 78.2%
3808767 140.1.1.17 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › CysS_C 0.62 42.0 3.17e-01 100.0% 28.0%
4585740 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.61 49.0 4.90e-01 98.9% 86.7%
5060973 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.61 36.0 3.52e-01 98.9% 53.7%
3493963 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.59 37.0 3.59e-01 75.0% 56.0%
4159097 206.1.3.15 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Lant_dehydr_N 0.58 42.0 2.62e-01 77.3% 88.0%
3956763 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.58 40.0 3.84e-01 71.6% 87.0%
5061619 1075.1.1.3 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 0.57 48.0 3.44e-01 94.3% 36.8%
3380265 140.1.1.14 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e 0.57 43.0 3.20e-01 97.7% 30.4%
4995043 3542.1.1.3 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.56 44.0 3.15e-01 86.4% 31.4%
3541292 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 3.74e-01 98.9% 61.0%
4615220 2004.1.1.483 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, AAA_19, UvrD_C 0.56 39.0 2.24e-01 73.9% 45.9%
3579472 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.55 35.0 3.15e-01 76.1% 43.1%
4995244 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.55 35.0 3.28e-01 76.1% 50.0%
3996957 101.1.2.506 alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.55 38.0 3.63e-01 95.5% 61.0%
4636695 304.36.1.1 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.55 37.0 4.13e-01 98.9% 92.6%
4978597 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.54 42.0 3.33e-01 83.0% 58.9%
5029669 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.54 34.0 3.13e-01 76.1% 45.8%
3257636 610.2.1.0 alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 0.54 41.0 3.74e-01 89.8% 61.7%
3989542 2484.1.1.269 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_4 0.54 39.0 3.73e-01 78.4% 64.8%
3614763 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.54 33.0 3.04e-01 75.0% 43.3%
3550136 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.54 34.0 3.19e-01 76.1% 48.7%
4598960 304.36.1.0 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like 0.53 37.0 4.08e-01 98.9% 92.9%
3609216 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 41.0 2.41e-01 83.0% 9.7%
3718200 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.53 38.0 3.35e-01 73.9% 56.8%
4392601 304.36.1.1 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.53 36.0 3.92e-01 98.9% 86.3%
3171568 3883.1.1.1 alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.53 39.0 3.02e-01 81.8% 52.3%
3244401 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.53 38.0 3.45e-01 75.0% 56.5%
5009323 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 36.0 3.10e-01 80.7% 41.6%
3533128 101.1.2.506 alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.52 37.0 3.52e-01 92.0% 60.9%
4215095 604.39.1.0 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.52 44.0 3.08e-01 100.0% 69.4%
3267498 109.6.1.2 alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N 0.52 41.0 2.70e-01 90.9% 33.6%
3941213 101.1.2.506 alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.52 38.0 3.68e-01 100.0% 70.0%
5060418 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 37.0 3.32e-01 75.0% 55.0%
4543273 304.36.1.1 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.51 35.0 3.91e-01 96.6% 100.0%
3928777 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.51 35.0 3.27e-01 79.5% 57.3%
4082847 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.50 42.0 3.59e-01 90.9% 77.9%
138578 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.50 36.0 3.51e-01 96.6% 67.7%
3225058 101.1.2.566 alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.50 36.0 2.46e-01 98.9% 20.3%
4965147 5001.1.1.292 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › HisKA_7TM 0.50 39.0 2.99e-01 86.4% 75.3%
3269516 102.1.1.41 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › EME1-MUS81_C 0.50 42.0 4.19e-01 96.6% 90.5%
D2 high residues 118-322
PDB
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a8eA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.86 68.0 7.27e-01 100.0% 92.7%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.81 62.0 6.70e-01 86.3% 91.9%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.75 62.0 6.36e-01 86.3% 89.7%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.73 60.0 5.89e-01 85.9% 84.6%
4acoA02 1.10.443.20 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Centromere DNA-binding protein complex CBF3 subunit, domain 2 0.67 63.0 5.23e-01 100.0% 94.4%
3sqiA02 1.10.443.20 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Centromere DNA-binding protein complex CBF3 subunit, domain 2 0.65 60.0 5.27e-01 100.0% 68.4%
4dwpA02 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.62 50.0 4.86e-01 87.3% 76.7%
2v6eA03 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.54 48.0 4.71e-01 100.0% 88.0%
3ly1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 23.0 2.85e-01 70.7% 65.9%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5028306 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 66.0 7.06e-01 85.9% 86.1%
5002702 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 64.0 6.73e-01 86.3% 80.5%
4637388 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 59.0 6.48e-01 86.3% 82.4%
4940211 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 64.0 7.07e-01 86.3% 90.6%
4979786 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 48.0 6.38e-01 70.2% 95.0%
5073434 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 78.0 7.96e-01 100.0% 96.5%
4992939 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 67.0 7.37e-01 99.0% 98.2%
5059725 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 61.0 6.51e-01 85.9% 83.3%
5030307 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 49.0 6.31e-01 70.2% 95.2%
5016981 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 47.0 6.15e-01 70.2% 95.0%
4997941 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 77.0 7.67e-01 100.0% 93.8%
5061203 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 62.0 6.44e-01 86.3% 81.6%
4954714 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 56.0 6.05e-01 70.7% 97.8%
4969226 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 52.0 6.40e-01 70.7% 97.8%
4928769 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.80 77.0 7.35e-01 100.0% 93.9%
5058518 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 69.0 7.10e-01 100.0% 93.8%
4966027 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 58.0 6.15e-01 85.9% 82.6%
4453818 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 55.0 6.38e-01 100.0% 94.7%
4959579 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 50.0 6.22e-01 70.2% 97.0%
4998614 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 75.0 7.51e-01 100.0% 98.1%
4954527 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 72.0 7.03e-01 100.0% 88.6%
5007182 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 54.0 6.20e-01 100.0% 92.9%
4947440 101.1.8.26 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Ribosomal_L32p 0.78 49.0 6.10e-01 100.0% 96.3%
4964439 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 65.0 6.44e-01 86.3% 85.6%
4964815 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 54.0 6.31e-01 70.2% 96.0%
4181053 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 62.0 6.29e-01 85.9% 83.5%
4981966 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 60.0 6.09e-01 86.3% 82.0%
4961786 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 52.0 6.08e-01 70.7% 94.0%
3954716 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 50.0 5.99e-01 70.2% 95.7%
4007467 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 67.0 6.57e-01 100.0% 86.4%
3587374 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 52.0 5.83e-01 70.7% 94.5%
4965640 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 71.0 6.79e-01 99.0% 93.9%
4928148 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.74 53.0 5.83e-01 86.3% 88.1%
5078379 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 67.0 6.82e-01 97.6% 99.0%
4965169 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.73 61.0 6.06e-01 86.3% 90.5%
5076857 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 58.0 6.31e-01 98.0% 97.7%
5011490 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 48.0 5.57e-01 70.2% 92.0%
3271483 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.70 58.0 6.02e-01 86.3% 92.6%
4961917 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.70 59.0 6.18e-01 100.0% 95.3%
4962166 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.70 59.0 6.17e-01 100.0% 96.8%