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IMGVR_UViG_3300009685_001255-3300009685-Ga0116142_1000210513

Arc-Vir

IMGVR_UViG_3300009685_001255-3300009685-Ga0116142_1000210513

Quality

51.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 27-151
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10145.15 best PhageMin_Tail 43.0 7.00e-11 51.2% 32.3%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rv1A01 1.20.1270.260 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.64 28.0 3.42e-01 72.0% 60.7%
2bl2A00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.61 44.0 4.07e-01 74.4% 84.0%
7powA01 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.59 45.0 3.89e-01 80.0% 94.9%
2pv4A00 1.10.3440.10 Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like 0.59 41.0 3.96e-01 72.0% 87.6%
3h74A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 44.0 3.36e-01 77.6% 57.2%
1td2A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 42.0 3.22e-01 75.2% 56.1%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 40.0 3.06e-01 73.6% 71.5%
6wb4B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 41.0 3.15e-01 81.6% 68.2%
1v1aA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 41.0 3.09e-01 79.2% 42.5%
4du5B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 40.0 3.09e-01 80.0% 42.4%
3dtoA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.53 36.0 4.18e-01 70.4% 100.0%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 39.0 3.83e-01 76.8% 78.8%
3bf5A01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 40.0 3.32e-01 81.6% 83.2%
3pl2A01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 40.0 3.20e-01 81.6% 75.8%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032310 159.1.2.6 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.95 70.0 6.46e-01 75.2% 62.7%
3941716 159.1.2.6 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.91 63.0 6.25e-01 70.4% 71.5%
3734334 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 44.0 5.11e-01 70.4% 97.8%
5070459 2485.1.1.67 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GILT 0.60 42.0 3.74e-01 73.6% 62.8%
5045846 633.6.1.55 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › DUF1512 0.56 38.0 3.48e-01 70.4% 52.5%
3590230 5073.1.1.0 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M 0.55 46.0 3.39e-01 90.4% 79.1%
3581554 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.55 38.0 3.20e-01 71.2% 93.3%
3971129 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.52 40.0 3.05e-01 81.6% 65.4%
57579 4002.1.1.0 alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes 0.51 36.0 3.10e-01 72.8% 100.0%
D2 medium residues 152-214
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lzjA02 1.10.8.1080 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.78 55.0 5.15e-01 92.1% 59.5%
1xb2B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.75 49.0 5.08e-01 85.7% 71.7%
1tr8A02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.74 45.0 5.29e-01 95.2% 100.0%
2dzlA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.73 53.0 5.31e-01 93.7% 75.8%
2l2dA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.71 50.0 4.82e-01 92.1% 64.4%
1a5tA02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.70 44.0 5.01e-01 81.0% 100.0%
4p17A02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.65 54.0 4.60e-01 100.0% 55.5%
3w0lD01 1.10.8.1080 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 52.0 4.52e-01 96.8% 57.4%
4cxfA01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 53.0 4.86e-01 96.8% 81.6%
5xnyA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.58 43.0 3.77e-01 85.7% 69.2%
5mypA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.55 45.0 3.00e-01 93.7% 66.1%
1a87A02 1.10.490.30 Mainly Alpha › Orthogonal Bundle › Globin-like › Colicin 0.54 43.0 3.11e-01 90.5% 79.0%
3g7rA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 42.0 3.16e-01 96.8% 98.4%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3315600 3764.1.1.0 alpha arrays › Repressor activator protein 1 (RAP1) helical bundle domain › Repressor activator protein 1 (RAP1) helical bundle domain › Repressor activator protein 1 (RAP1) helical bundle domain 0.81 56.0 5.92e-01 84.1% 81.8%
4623822 103.13.1.0 alpha arrays › RuvA-C › C-terminal lid domain of glucokinase regulatory protein › C-terminal lid domain of glucokinase regulatory protein 0.77 54.0 5.12e-01 92.1% 62.7%
4207508 103.1.1.84 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28540 0.74 50.0 5.29e-01 87.3% 80.0%
4081317 103.13.1.0 alpha arrays › RuvA-C › C-terminal lid domain of glucokinase regulatory protein › C-terminal lid domain of glucokinase regulatory protein 0.72 51.0 4.98e-01 92.1% 67.1%
3226566 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.71 48.0 4.93e-01 82.5% 73.3%
3349120 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.67 52.0 4.89e-01 100.0% 68.8%
4977471 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.64 53.0 3.44e-01 95.2% 21.7%
3813410 103.1.1.30 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › GIP1_N 0.62 48.0 4.89e-01 100.0% 88.3%
3519453 3922.1.1.216 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › OATP 0.61 46.0 3.65e-01 82.5% 66.7%
3641075 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.59 47.0 4.75e-01 92.1% 87.7%
3684006 148.1.3.205 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_At3g28540 0.57 48.0 4.50e-01 100.0% 86.3%
3982121 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.56 44.0 3.29e-01 88.9% 46.3%
4500379 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.56 45.0 3.05e-01 90.5% 62.4%
4358647 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.53 37.0 3.42e-01 77.8% 84.4%
3343191 574.1.1.1 alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp 0.52 35.0 3.34e-01 73.0% 58.7%
D3 medium residues 215-310
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10145.15 best PhageMin_Tail 49.0 9.90e-13 75.0% 35.8%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 35.0 3.77e-01 76.0% 71.8%
2fgeA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.57 47.0 3.61e-01 92.7% 69.9%
1zk8B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 42.0 3.79e-01 78.1% 90.9%
5cqgA03 1.10.10.2210 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 34.0 3.71e-01 93.8% 72.2%
3gziA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 40.0 3.22e-01 76.0% 67.5%
1bwoA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.56 37.0 3.86e-01 75.0% 73.3%
1ddbA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.55 43.0 3.49e-01 86.5% 86.7%
1ll1A01 1.20.1370.10 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Hemocyanin, N-terminal domain 0.54 39.0 3.95e-01 83.3% 73.7%
2ykgA03 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.54 41.0 3.79e-01 91.7% 59.4%
3nkeA00 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.54 39.0 3.25e-01 77.1% 99.5%
1wlmA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 38.0 3.75e-01 76.0% 98.1%
8hk0C01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 42.0 3.71e-01 89.6% 86.7%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.52 38.0 3.21e-01 78.1% 95.5%
4g9qA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.52 41.0 3.21e-01 89.6% 78.2%
2etdA00 1.20.1440.20 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain 0.51 43.0 3.81e-01 92.7% 90.1%
1zu2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 40.0 3.41e-01 84.4% 67.7%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.51 44.0 3.28e-01 100.0% 74.7%
2rfqC03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.50 41.0 3.50e-01 93.8% 96.6%
6xpdA01 1.20.1510.10 Mainly Alpha › Up-down Bundle › Alpha-lytic protease prodomain-like › Cation efflux protein transmembrane domain 0.50 40.0 3.26e-01 89.6% 92.1%
2lqgA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.50 41.0 3.72e-01 93.8% 91.3%
2vxxA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.50 42.0 3.51e-01 93.8% 62.2%
3zj0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 36.0 2.88e-01 75.0% 80.2%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030882 159.1.2.6 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.83 77.0 5.85e-01 100.0% 48.6%
3945172 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.68 60.0 4.69e-01 100.0% 45.2%
3663874 2484.1.1.157 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.56 47.0 3.17e-01 94.8% 48.8%
5047150 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 31.0 2.40e-01 95.8% 26.0%
3405406 5051.1.1.6 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.54 44.0 2.92e-01 89.6% 87.9%
3295267 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.53 45.0 3.85e-01 100.0% 90.8%
1171944 633.6.1.4 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_2 0.53 43.0 3.62e-01 90.6% 84.2%
3974142 5069.1.1.57 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › PepSY_TM 0.52 37.0 3.04e-01 74.0% 85.8%
3784544 4156.1.1.0 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.52 40.0 3.67e-01 82.3% 72.8%
4988441 5069.1.1.10 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF4079 0.52 36.0 3.30e-01 75.0% 72.9%
3221185 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.51 44.0 3.86e-01 96.9% 84.7%
4507521 304.107.1.3 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › TrmE_N 0.51 42.0 3.15e-01 94.8% 94.9%
3282593 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.51 43.0 3.33e-01 97.9% 66.3%
3818714 3562.1.1.11 alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › PGG 0.51 38.0 3.29e-01 81.2% 99.4%
D4 medium residues 719-771
PDB