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IMGVR_UViG_3300009688_000032-3300009688-Ga0116176_1000097029
Arc-VirIMGVR_UViG_3300009688_000032-3300009688-Ga0116176_1000097029
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 164-225
Domain cluster:
rep: MG711465.1__AUV56627.1__X__00008__D175-234
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fhzA00 | 3.30.190.30 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › | 0.59 | 40.0 | 3.46e-01 | 72.6% | 71.7% |
| 1sdoA00 | 3.40.91.20 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.58 | 40.0 | 2.91e-01 | 100.0% | 24.0% |
| 1alo006 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.57 | 40.0 | 3.22e-01 | 74.2% | 57.9% |
| 3q9tA02 | 3.30.560.10 | Alpha Beta › 2-Layer Sandwich › Glucose Oxidase; domain 3 › Glucose Oxidase, domain 3 | 0.54 | 38.0 | 2.44e-01 | 74.2% | 69.3% |
| 7t71A01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.53 | 41.0 | 2.87e-01 | 85.5% | 85.5% |
| 4k00A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 42.0 | 3.30e-01 | 90.3% | 88.3% |
| 1lxnA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 3.76e-01 | 98.4% | 91.8% |
| 3h11A00 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 38.0 | 2.71e-01 | 83.9% | 82.5% |
| 1t4aA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.50 | 41.0 | 3.92e-01 | 98.4% | 100.0% |
| 4hzoA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 43.0 | 2.81e-01 | 100.0% | 21.3% |
| 1whwA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 40.0 | 3.64e-01 | 95.2% | 95.7% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3506893 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.67 | 46.0 | 2.92e-01 | 71.0% | 25.4% |
| 3330365 | 2003.1.5.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 | 0.57 | 40.0 | 2.96e-01 | 74.2% | 33.1% |
| 3733530 | 304.133.1.0 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein | 0.57 | 41.0 | 3.65e-01 | 77.4% | 93.3% |
| 3485700 | 3223.1.1.1 ↗ | beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › ASC | 0.55 | 47.0 | 3.17e-01 | 100.0% | 51.5% |
| 3963369 | 4222.1.1.2 ↗ | a+b two layers › ImmE5-like › ImmE5-like › ImmE5-like › Imm40 | 0.55 | 38.0 | 3.39e-01 | 74.2% | 72.6% |
| 3691174 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 38.0 | 3.17e-01 | 75.8% | 94.2% |
| 4954337 | 298.2.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE | 0.54 | 46.0 | 3.27e-01 | 95.2% | 65.6% |
| 3896678 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.54 | 37.0 | 3.13e-01 | 74.2% | 39.2% |
| 3594297 | 872.3.1.5 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 | 0.52 | 40.0 | 3.56e-01 | 85.5% | 97.9% |
| 4230648 | 708.1.1.24 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › ALS2CR8 | 0.52 | 35.0 | 2.76e-01 | 71.0% | 56.0% |
| 3938775 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.51 | 41.0 | 3.03e-01 | 91.9% | 70.8% |
| 5029745 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.51 | 39.0 | 3.56e-01 | 80.6% | 97.5% |
D2
medium
residues 1-86
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3o39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.67 | 48.0 | 4.68e-01 | 80.2% | 67.7% |
| 1e3gA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.54 | 43.0 | 3.10e-01 | 86.0% | 40.8% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3249527 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.76 | 57.0 | 4.80e-01 | 77.9% | 53.3% |
| 4027713 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.75 | 52.0 | 5.20e-01 | 73.3% | 68.9% |
| 3333490 | 4207.1.1.86 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › BPS1 | 0.74 | 52.0 | 5.02e-01 | 72.1% | 66.3% |
| 4021948 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.72 | 63.0 | 3.75e-01 | 98.8% | 14.0% |
| 3706043 | 323.1.1.6 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf | 0.66 | 41.0 | 3.38e-01 | 73.3% | 33.8% |
| 3583910 | 304.18.1.3 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › EMC3_TMCO1 | 0.56 | 47.0 | 4.16e-01 | 91.9% | 78.4% |
D3
medium
residues 87-159
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.91 | 64.0 | 5.59e-01 | 72.6% | 54.9% |
| 1e2aA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.86 | 60.0 | 5.29e-01 | 72.6% | 54.9% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.84 | 72.0 | 6.26e-01 | 90.4% | 66.7% |
| 1yuzB01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.83 | 62.0 | 4.88e-01 | 78.1% | 78.3% |
| 1sg2A00 | 3.30.910.20 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain | 0.81 | 58.0 | 4.61e-01 | 75.3% | 56.7% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.81 | 57.0 | 6.03e-01 | 72.6% | 84.4% |
| 6vxcA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.80 | 71.0 | 3.99e-01 | 95.9% | 44.7% |
| 1lkoA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.76 | 61.0 | 4.79e-01 | 84.9% | 77.2% |
| 4i1mB01 | 1.20.120.1700 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.76 | 55.0 | 4.47e-01 | 75.3% | 43.4% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.74 | 57.0 | 4.70e-01 | 80.8% | 66.1% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.73 | 52.0 | 5.32e-01 | 76.7% | 83.1% |
| 4od4A02 | 1.20.120.1780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase | 0.71 | 51.0 | 4.31e-01 | 75.3% | 49.6% |
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.66 | 47.0 | 5.22e-01 | 78.1% | 98.2% |
| 6k9pB02 | 1.20.1300.20 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 | 0.63 | 44.0 | 3.41e-01 | 72.6% | 36.2% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4426045 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.92 | 79.0 | 6.10e-01 | 90.4% | 47.6% |
| 4974450 | 3291.1.1.4 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30 | 0.91 | 79.0 | 5.72e-01 | 90.4% | 39.4% |
| 5056592 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.86 | 63.0 | 3.91e-01 | 76.7% | 16.4% |
| 4809272 | 3291.1.1.4 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30 | 0.84 | 71.0 | 5.89e-01 | 90.4% | 57.0% |
| 3584523 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.81 | 61.0 | 4.57e-01 | 79.5% | 35.6% |
| 3935389 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.79 | 71.0 | 5.31e-01 | 100.0% | 90.6% |
| 3452252 | 3291.1.1.3 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Ist1 | 0.75 | 66.0 | 4.88e-01 | 100.0% | 63.1% |