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IMGVR_UViG_3300009688_000032-3300009688-Ga0116176_100009706
Arc-VirIMGVR_UViG_3300009688_000032-3300009688-Ga0116176_100009706
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 123-244
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ma5A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.69 | 40.0 | 4.55e-01 | 83.6% | 76.7% |
| 3kyiA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.68 | 40.0 | 4.01e-01 | 73.0% | 56.2% |
| 3eslA02 | 1.25.40.930 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 39.0 | 4.02e-01 | 87.7% | 63.9% |
| 2lahA00 | 1.25.40.430 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.62 | 38.0 | 3.51e-01 | 86.1% | 45.6% |
| 3himA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 47.0 | 4.06e-01 | 80.3% | 68.9% |
| 2katA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 40.0 | 4.16e-01 | 89.3% | 69.6% |
| 2vxxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 43.0 | 3.80e-01 | 72.1% | 82.0% |
| 3cqcA00 | 1.20.190.50 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › | 0.61 | 51.0 | 4.04e-01 | 90.2% | 44.5% |
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 42.0 | 3.76e-01 | 71.3% | 80.0% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 43.0 | 4.13e-01 | 73.0% | 94.2% |
| 2chpA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 43.0 | 4.05e-01 | 73.8% | 94.6% |
| 1cunA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 41.0 | 4.43e-01 | 70.5% | 93.1% |
| 3iq1B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 42.0 | 3.82e-01 | 72.1% | 88.1% |
| 1n4kA02 | 1.25.10.30 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain | 0.59 | 49.0 | 4.65e-01 | 90.2% | 78.4% |
| 2gs4A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.58 | 41.0 | 3.82e-01 | 73.0% | 93.0% |
| 4rg6A03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 40.0 | 3.92e-01 | 100.0% | 63.9% |
| 2oduA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 39.0 | 4.19e-01 | 72.1% | 89.5% |
| 4me9B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 43.0 | 3.79e-01 | 82.8% | 71.5% |
| 6d5xA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.55 | 39.0 | 3.63e-01 | 72.1% | 88.1% |
| 3htaC00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 43.0 | 3.78e-01 | 84.4% | 67.7% |
| 1ui6A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 42.0 | 3.63e-01 | 82.0% | 67.7% |
| 2wmoA01 | 1.25.40.410 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DOCK DHR2 domain, lobe A | 0.53 | 44.0 | 4.29e-01 | 90.2% | 85.1% |
| 3edvB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 37.0 | 3.62e-01 | 72.1% | 70.6% |
| 1r76A00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.53 | 46.0 | 3.25e-01 | 95.1% | 67.2% |
| 3pasA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 40.0 | 3.54e-01 | 84.4% | 67.4% |
| 6hwjA01 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.51 | 40.0 | 3.32e-01 | 84.4% | 98.8% |
| 3w5mA05 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.51 | 46.0 | 3.34e-01 | 100.0% | 51.0% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4603334 | 7011.1.1.0 ↗ | alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain | 0.70 | 66.0 | 4.92e-01 | 100.0% | 62.9% |
| 3232478 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 45.0 | 3.77e-01 | 89.3% | 39.5% |
| 5001522 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.65 | 45.0 | 4.89e-01 | 72.1% | 91.3% |
| 4567971 | 109.4.1.888 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_N | 0.64 | 44.0 | 3.91e-01 | 88.5% | 50.0% |
| 3915676 | 109.4.1.218 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP | 0.63 | 45.0 | 4.85e-01 | 88.5% | 87.6% |
| 3513985 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.60 | 42.0 | 3.44e-01 | 72.1% | 50.4% |
| 4161991 | 604.12.1.4 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT1 | 0.59 | 42.0 | 3.86e-01 | 73.0% | 76.1% |
| 3338743 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 50.0 | 4.48e-01 | 95.1% | 75.4% |
| 3834093 | 109.4.1.146 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cohesin_load | 0.58 | 52.0 | 3.74e-01 | 99.2% | 48.7% |
| 3603733 | 4121.1.1.19 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF27230 | 0.58 | 40.0 | 2.95e-01 | 70.5% | 63.4% |
| 3222717 | 109.4.1.626 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRAPPC9-Trs120 | 0.58 | 46.0 | 3.67e-01 | 89.3% | 42.0% |
| 3496174 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.57 | 50.0 | 3.17e-01 | 95.1% | 24.7% |
| 3726772 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 42.0 | 3.99e-01 | 97.5% | 66.9% |
| 3590294 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.55 | 50.0 | 3.44e-01 | 100.0% | 68.4% |
| 3577087 | 5001.1.1.35 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srsx | 0.54 | 39.0 | 3.38e-01 | 100.0% | 46.7% |
| 1291945 | 109.2.1.11 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_52 | 0.54 | 49.0 | 3.39e-01 | 100.0% | 62.9% |
| 5029437 | 3558.1.1.0 ↗ | alpha arrays › HSDR subunit helical domain › HSDR subunit helical domain › HSDR subunit helical domain | 0.54 | 42.0 | 4.38e-01 | 83.6% | 95.5% |
| 3704180 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 48.0 | 3.37e-01 | 98.4% | 65.3% |
| 3189514 | 109.62.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › AFF4 C-terminal homology domain › AFF4 C-terminal homology domain | 0.53 | 48.0 | 4.10e-01 | 99.2% | 87.7% |
| 3502134 | 109.4.1.626 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRAPPC9-Trs120 | 0.53 | 47.0 | 3.68e-01 | 100.0% | 52.4% |
| 3438260 | 109.4.1.626 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRAPPC9-Trs120 | 0.52 | 47.0 | 3.46e-01 | 100.0% | 45.9% |
| 4003934 | 3352.1.1.6 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › Glyco_transf_22 | 0.51 | 46.0 | 3.29e-01 | 99.2% | 75.4% |
| 3381188 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 42.0 | 3.39e-01 | 92.6% | 86.3% |
D2
medium
residues 1-71
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kg7B00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.68 | 51.0 | 4.60e-01 | 83.1% | 58.8% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.67 | 48.0 | 4.62e-01 | 80.3% | 67.1% |
| 1hwyA01 | 1.10.287.140 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 39.0 | 4.34e-01 | 76.1% | 86.3% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 40.0 | 3.92e-01 | 83.1% | 58.0% |
| 2yevC00 | 6.10.280.110 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 46.0 | 4.92e-01 | 80.3% | 88.9% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 49.0 | 4.70e-01 | 85.9% | 75.6% |
| 2fb5A01 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.61 | 46.0 | 4.64e-01 | 80.3% | 88.9% |
| 1knzA01 | 6.10.280.20 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain | 0.61 | 45.0 | 3.98e-01 | 81.7% | 53.9% |
| 1rfyB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.60 | 46.0 | 4.30e-01 | 81.7% | 73.9% |
| 2xokP00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.60 | 45.0 | 4.48e-01 | 84.5% | 77.0% |
| 3e22A03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.60 | 43.0 | 4.85e-01 | 80.3% | 100.0% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.60 | 46.0 | 4.43e-01 | 81.7% | 84.0% |
| 1s5jA04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.60 | 42.0 | 4.49e-01 | 80.3% | 86.9% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.59 | 45.0 | 4.24e-01 | 80.3% | 71.8% |
| 2kwhA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 41.0 | 4.54e-01 | 76.1% | 94.6% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 45.0 | 4.53e-01 | 85.9% | 90.1% |
| 4kzsA02 | 6.10.140.1870 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 38.0 | 3.88e-01 | 80.3% | 72.9% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 47.0 | 4.18e-01 | 95.8% | 91.2% |
| 4jioA01 | 1.20.120.560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain | 0.55 | 42.0 | 3.21e-01 | 81.7% | 36.0% |
| 3a98A02 | 1.20.1270.350 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain | 0.52 | 46.0 | 4.26e-01 | 95.8% | 85.1% |
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 42.0 | 3.70e-01 | 95.8% | 85.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5054424 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.67 | 48.0 | 4.68e-01 | 81.7% | 67.5% |
| 3981640 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.65 | 49.0 | 4.56e-01 | 81.7% | 64.4% |
| 5030987 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.61 | 47.0 | 4.51e-01 | 88.7% | 72.5% |
| 2518028 | 5044.1.1.1 ↗ | extended segments › PsbZ-like › PsbZ-like › PsbZ-like › Ycf9 | 0.61 | 46.0 | 4.99e-01 | 80.3% | 98.4% |
| 56760 | 150.3.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine | 0.57 | 51.0 | 3.92e-01 | 100.0% | 71.2% |
| 5061636 | 150.1.1.205 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Trp_dioxygenase | 0.55 | 44.0 | 4.20e-01 | 87.3% | 89.3% |
| 3936978 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 47.0 | 3.04e-01 | 94.4% | 27.2% |
D3
medium
residues 72-122
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ko5A02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.70 | 60.0 | 3.71e-01 | 98.0% | 23.6% |
| 3lxuX03 | 6.10.250.3080 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.67 | 47.0 | 4.44e-01 | 100.0% | 61.3% |
| 1grjA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.64 | 55.0 | 4.97e-01 | 100.0% | 71.6% |
| 2kg7B00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.63 | 52.0 | 4.30e-01 | 96.1% | 53.6% |
| 2bskE00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.61 | 52.0 | 4.89e-01 | 98.0% | 87.3% |
| 4ciuA04 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.60 | 46.0 | 3.86e-01 | 92.2% | 47.3% |
| 3bexA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 43.0 | 3.49e-01 | 86.3% | 77.7% |
| 3lsjA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 49.0 | 3.45e-01 | 94.1% | 45.1% |
| 5ab0C04 | 1.25.50.20 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › | 0.57 | 46.0 | 2.92e-01 | 100.0% | 75.8% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3840604 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.72 | 60.0 | 3.96e-01 | 98.0% | 22.3% |
| 5072888 | 3559.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 | 0.71 | 59.0 | 4.45e-01 | 98.0% | 45.9% |
| 5050345 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 60.0 | 4.88e-01 | 100.0% | 55.8% |
| 5011721 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.63 | 51.0 | 4.95e-01 | 98.0% | 83.1% |
| 4017561 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.62 | 53.0 | 3.21e-01 | 100.0% | 30.4% |
| 3639211 | 243.1.1.50 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LIM_bind | 0.56 | 46.0 | 3.19e-01 | 100.0% | 70.4% |
| 3683316 | 109.4.1.2506 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, PPR_long, TPR_24 | 0.51 | 40.0 | 2.21e-01 | 84.3% | 15.0% |
D4
medium
residues 245-370
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 35.0 | 3.72e-01 | 96.0% | 63.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5083675 | 7011.1.1.6 ↗ | alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C | 0.83 | 69.0 | 4.68e-01 | 89.7% | 27.9% |
| 3946506 | 7011.1.1.6 ↗ | alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C | 0.79 | 67.0 | 4.61e-01 | 90.5% | 29.2% |
| 3987661 | 7011.1.1.6 ↗ | alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C | 0.79 | 68.0 | 5.02e-01 | 91.3% | 39.0% |
| 3989196 | 7011.1.1.6 ↗ | alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C | 0.74 | 62.0 | 4.40e-01 | 89.7% | 31.1% |
| 3987008 | 7011.1.1.6 ↗ | alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C | 0.73 | 63.0 | 4.25e-01 | 90.5% | 29.9% |
| 4329718 | 7011.1.1.6 ↗ | alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C | 0.73 | 69.0 | 4.74e-01 | 100.0% | 38.1% |
| 3164267 | 3352.1.1.39 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › Wzy_C | 0.72 | 68.0 | 4.75e-01 | 99.2% | 43.5% |
| 4135738 | 7011.1.1.6 ↗ | alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C | 0.71 | 68.0 | 4.61e-01 | 100.0% | 39.3% |
| 3972810 | 7011.1.1.6 ↗ | alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C | 0.71 | 62.0 | 4.14e-01 | 91.3% | 27.3% |
| 4301705 | 7011.1.1.6 ↗ | alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C | 0.71 | 66.0 | 4.35e-01 | 100.0% | 37.7% |
| 4524855 | 7011.1.1.6 ↗ | alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C | 0.70 | 65.0 | 4.48e-01 | 100.0% | 43.0% |
| 4988211 | 7011.1.1.0 ↗ | alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain | 0.70 | 66.0 | 4.91e-01 | 100.0% | 44.6% |
| 5013899 | 7011.1.1.0 ↗ | alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain | 0.69 | 63.0 | 4.76e-01 | 100.0% | 92.3% |
| 3964019 | 7011.1.1.6 ↗ | alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C | 0.64 | 61.0 | 4.06e-01 | 100.0% | 37.2% |
| 3262256 | 610.1.1.1 ↗ | alpha arrays › ERP29 C domain-like › ERP29 C domain-like › ERP29 C domain-like › ERp29 | 0.58 | 41.0 | 4.59e-01 | 92.1% | 95.8% |
| 3637269 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.55 | 24.0 | 2.81e-01 | 100.0% | 53.8% |
| 3255465 | 3602.1.1.6 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › RWP-RK | 0.53 | 33.0 | 3.82e-01 | 80.2% | 90.6% |