←Back to structures

IMGVR_UViG_3300009689_000661-3300009689-Ga0116186_101267511

Arc-Vir

IMGVR_UViG_3300009689_000661-3300009689-Ga0116186_101267511

Identity

Kingdom:
archaea

Quality

88.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-95
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.73 44.0 4.25e-01 89.1% 52.8%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.65 33.0 4.32e-01 70.7% 93.5%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 39.0 4.27e-01 95.7% 77.6%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.58 31.0 2.55e-01 87.0% 26.7%
3icaB00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 40.0 3.11e-01 93.5% 32.5%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 30.0 2.80e-01 72.8% 37.7%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.56 40.0 3.56e-01 89.1% 51.1%
3s98A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 33.0 3.35e-01 90.2% 58.9%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.55 38.0 3.63e-01 100.0% 60.2%
2oztA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 30.0 2.79e-01 100.0% 39.8%
3pcoB05 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 37.0 2.89e-01 92.4% 32.1%
2gdqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 29.0 2.84e-01 72.8% 43.9%
2bi0A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 42.0 3.61e-01 87.0% 87.8%
3eo5A01 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.52 35.0 3.63e-01 98.9% 72.7%
4jguA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 32.0 3.24e-01 83.7% 62.1%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.51 36.0 3.74e-01 91.3% 78.8%
3pgbA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.51 42.0 2.65e-01 92.4% 69.5%
4mb8D00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.50 42.0 3.12e-01 100.0% 51.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3488620 395.1.1.0 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related 0.54 37.0 4.21e-01 76.1% 100.0%
4325103 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.53 36.0 2.79e-01 92.4% 29.5%
4174055 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.51 41.0 3.27e-01 88.0% 56.5%
3525853 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.50 44.0 3.82e-01 100.0% 93.3%
4490044 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.50 41.0 2.90e-01 89.1% 32.6%