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IMGVR_UViG_3300009689_000661-3300009689-Ga0116186_10126754
Arc-VirIMGVR_UViG_3300009689_000661-3300009689-Ga0116186_10126754
Identity
- Kingdom:
- archaea
Quality
82.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-64
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fp1B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.74 | 54.0 | 3.91e-01 | 77.0% | 48.2% |
| 3bbzA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.74 | 53.0 | 5.85e-01 | 78.7% | 97.9% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.71 | 53.0 | 5.51e-01 | 78.7% | 89.1% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.70 | 53.0 | 5.60e-01 | 82.0% | 90.9% |
| 1c3cA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.70 | 53.0 | 4.71e-01 | 83.6% | 87.9% |
| 4pfyA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.64 | 54.0 | 3.66e-01 | 96.7% | 77.2% |
| 2pjqA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.64 | 53.0 | 4.73e-01 | 93.4% | 78.7% |
| 4gkfA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.64 | 43.0 | 3.34e-01 | 72.1% | 50.0% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.64 | 48.0 | 4.45e-01 | 83.6% | 92.4% |
| 1yz6A02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.63 | 48.0 | 4.42e-01 | 86.9% | 88.5% |
| 2vixA02 | 1.10.150.630 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.63 | 43.0 | 3.88e-01 | 72.1% | 52.8% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.59 | 39.0 | 4.37e-01 | 86.9% | 93.3% |
| 1bcrA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 47.0 | 3.23e-01 | 95.1% | 37.0% |
| 6epyA01 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.58 | 51.0 | 3.36e-01 | 98.4% | 96.5% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 40.0 | 3.41e-01 | 80.3% | 71.3% |
| 2oivA00 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.54 | 43.0 | 3.12e-01 | 86.9% | 60.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3285577 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.81 | 64.0 | 4.60e-01 | 85.2% | 34.5% |
| 3277752 | 2003.1.3.23 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › NAD_binding_9 | 0.80 | 64.0 | 3.64e-01 | 86.9% | 9.9% |
| 3506389 | 632.13.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like | 0.78 | 53.0 | 5.92e-01 | 78.7% | 95.6% |
| 3279945 | 632.13.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like | 0.72 | 51.0 | 5.69e-01 | 88.5% | 100.0% |
| 5016007 | 632.13.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like | 0.72 | 51.0 | 5.58e-01 | 75.4% | 100.0% |
| 3596444 | 632.13.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like | 0.72 | 50.0 | 5.62e-01 | 75.4% | 100.0% |
| 4456198 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 56.0 | 3.98e-01 | 86.9% | 52.4% |
| 3544445 | 101.26.1.0 ↗ | alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain | 0.70 | 49.0 | 5.35e-01 | 73.8% | 100.0% |
| 3164594 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 48.0 | 5.23e-01 | 75.4% | 97.8% |
| 4009443 | 101.26.1.0 ↗ | alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain | 0.69 | 48.0 | 5.22e-01 | 75.4% | 97.8% |
| 4384656 | 632.2.1.4 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA-like | 0.68 | 50.0 | 5.16e-01 | 78.7% | 89.1% |
| 4095642 | 2485.1.1.41 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_4 | 0.66 | 52.0 | 3.66e-01 | 86.9% | 30.5% |
| 4665589 | 131.1.1.4 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc | 0.66 | 55.0 | 3.38e-01 | 93.4% | 35.4% |
| 3510833 | 592.1.1.2 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › Helicase_PWI | 0.61 | 49.0 | 3.95e-01 | 90.2% | 52.0% |
| 3561589 | 103.1.1.51 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_SIK3 | 0.53 | 44.0 | 4.31e-01 | 91.8% | 89.2% |
| 5059935 | 212.1.1.3 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N | 0.53 | 47.0 | 3.33e-01 | 100.0% | 38.4% |
| 3262798 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.52 | 39.0 | 3.52e-01 | 83.6% | 61.1% |