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IMGVR_UViG_3300009690_000630-3300009690-Ga0116143_1000481215

Arc-Vir

IMGVR_UViG_3300009690_000630-3300009690-Ga0116143_1000481215

Quality

70.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-44
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iuwA00 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.75 60.0 3.83e-01 100.0% 55.1%
1u0kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.75 51.0 3.47e-01 72.2% 20.5%
2azeB00 6.10.250.540 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.70 47.0 3.43e-01 77.8% 24.8%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.67 46.0 2.96e-01 72.2% 71.7%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.67 53.0 3.11e-01 100.0% 66.2%
2kdnA00 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.67 52.0 3.95e-01 100.0% 34.3%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.66 51.0 4.05e-01 97.2% 40.0%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.66 51.0 3.76e-01 91.7% 78.0%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.65 51.0 4.01e-01 100.0% 95.8%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 45.0 3.24e-01 77.8% 24.1%
3w1yB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.65 52.0 3.93e-01 100.0% 55.8%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.65 51.0 3.54e-01 100.0% 38.0%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 51.0 4.17e-01 100.0% 46.9%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 47.0 3.11e-01 86.1% 25.7%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 47.0 3.73e-01 94.4% 36.0%
3g1nA02 3.30.2160.10 Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.63 40.0 3.08e-01 100.0% 25.0%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 44.0 3.50e-01 80.6% 43.0%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 46.0 3.21e-01 83.3% 83.7%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 3.41e-01 86.1% 52.4%
1a97B00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 47.0 3.21e-01 88.9% 60.1%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.61 48.0 3.50e-01 97.2% 33.9%
4clfA02 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.60 48.0 3.13e-01 100.0% 29.3%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 3.38e-01 86.1% 60.4%
1qmgB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 47.0 3.00e-01 94.4% 74.1%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.60 47.0 3.52e-01 88.9% 97.8%
1xhsA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.60 41.0 3.05e-01 77.8% 26.5%
3auxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 50.0 2.86e-01 97.2% 14.4%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.58 47.0 3.92e-01 97.2% 50.7%
4ciuA04 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 45.0 3.56e-01 100.0% 39.8%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 43.0 2.74e-01 80.6% 61.1%
1zunB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 43.0 2.82e-01 88.9% 18.7%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 45.0 3.27e-01 100.0% 24.8%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 41.0 3.04e-01 83.3% 81.8%
3f1yA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.57 44.0 2.63e-01 91.7% 47.5%
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.57 42.0 4.15e-01 94.4% 87.8%
4at7A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 41.0 2.83e-01 100.0% 20.4%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.56 38.0 2.35e-01 75.0% 10.8%
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.56 43.0 3.79e-01 88.9% 68.4%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 41.0 3.36e-01 97.2% 94.4%
4uhvA02 3.55.50.10 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains 0.55 45.0 3.47e-01 100.0% 92.4%
1ldjA05 4.10.1030.10 Few Secondary Structures › Irregular › Ring Box Chain A; domain 5 › Ring Box Chain A; domain 5 0.55 39.0 3.34e-01 83.3% 36.5%
3p26A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 43.0 2.67e-01 88.9% 16.2%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.55 42.0 2.75e-01 97.2% 61.9%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 3.37e-01 100.0% 37.9%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.54 48.0 3.63e-01 100.0% 82.1%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 46.0 2.72e-01 100.0% 17.1%
2z86D02 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 43.0 2.65e-01 100.0% 48.5%
1zoyA04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.53 38.0 3.25e-01 80.6% 66.2%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 41.0 2.74e-01 100.0% 25.3%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.52 41.0 2.69e-01 97.2% 27.1%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.52 41.0 2.63e-01 97.2% 93.0%
2ch0A01 1.10.10.1180 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAN1, winged-helix domain 0.52 36.0 2.87e-01 83.3% 33.7%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 37.0 2.64e-01 88.9% 21.5%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 3.45e-01 100.0% 77.9%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 45.0 2.91e-01 100.0% 28.0%
1mvfD00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.51 39.0 3.77e-01 97.2% 88.6%
2e55A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 36.0 2.40e-01 88.9% 56.2%
2lfvA00 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.51 36.0 2.86e-01 94.4% 31.1%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3508353 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.78 58.0 3.46e-01 80.6% 23.2%
3465508 10.12.1.53 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.74 63.0 4.05e-01 100.0% 83.8%
3466238 206.1.1.14 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.72 53.0 2.94e-01 77.8% 8.0%
4408503 192.2.1.43 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › TraD_N 0.69 49.0 3.35e-01 77.8% 76.3%
5079277 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.67 55.0 4.81e-01 100.0% 60.3%
3168821 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.67 57.0 3.31e-01 100.0% 16.7%
5027827 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.66 51.0 4.12e-01 97.2% 47.1%
3673110 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.66 49.0 4.92e-01 97.2% 85.0%
3502651 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 48.0 4.37e-01 91.7% 60.0%
3262514 7573.1.1.3 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyl_synth 0.62 47.0 3.09e-01 86.1% 69.7%
3568038 386.1.1.41 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf_C2H2_ZHX 0.59 45.0 4.15e-01 86.1% 70.0%
5000862 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.59 44.0 2.78e-01 97.2% 35.0%
3220364 6166.1.1.1 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.59 47.0 2.98e-01 94.4% 18.0%
5077968 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.58 44.0 3.25e-01 97.2% 73.6%
4967502 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.58 45.0 4.34e-01 97.2% 75.6%
4986319 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.58 43.0 4.11e-01 100.0% 70.0%
3682777 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.58 42.0 2.98e-01 100.0% 29.1%
5040491 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.58 44.0 3.80e-01 100.0% 50.0%
3940062 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 43.0 2.54e-01 86.1% 9.8%
2323881 3433.1.2.1 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.57 45.0 3.99e-01 100.0% 59.3%
3217385 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 39.0 3.01e-01 72.2% 67.1%
5012674 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.57 44.0 3.75e-01 100.0% 50.0%
3309335 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.57 46.0 2.58e-01 91.7% 17.3%
5001623 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.56 40.0 3.93e-01 100.0% 70.0%
5032296 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.55 44.0 4.02e-01 100.0% 65.5%
3362870 109.4.1.1269 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.55 41.0 2.49e-01 83.3% 20.9%
4363328 148.1.3.8 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small 0.55 45.0 3.49e-01 100.0% 82.1%
5065699 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.55 40.0 3.96e-01 100.0% 77.8%
5031362 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.54 41.0 3.71e-01 100.0% 58.3%
4933873 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.54 41.0 3.81e-01 100.0% 63.6%
3412378 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 46.0 4.35e-01 100.0% 88.9%
4936825 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.54 39.0 3.78e-01 100.0% 70.0%
3252212 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.53 46.0 3.67e-01 100.0% 48.0%
4989946 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.53 42.0 3.03e-01 91.7% 30.0%
4639978 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.53 40.0 3.76e-01 100.0% 65.5%
4009409 109.4.1.2353 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HemY_N, TPR_2 0.52 46.0 2.59e-01 100.0% 12.3%
3603458 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 44.0 3.23e-01 97.2% 75.0%
185814 101.1.4.12 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.52 36.0 2.99e-01 83.3% 38.8%
141070 223.3.1.1 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.52 43.0 3.81e-01 100.0% 78.9%
3468311 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.52 45.0 2.58e-01 100.0% 76.9%
5081177 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.52 37.0 3.69e-01 100.0% 77.8%
4588825 589.1.1.20 alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › TraD_N 0.51 46.0 3.08e-01 100.0% 34.6%
3366822 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.51 43.0 2.57e-01 100.0% 95.3%
3512585 5010.1.1.5 extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › TraD_N 0.51 45.0 3.16e-01 100.0% 39.1%
3965667 109.4.1.520 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HemY_N 0.50 45.0 2.51e-01 100.0% 10.9%