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IMGVR_UViG_3300009690_000630-3300009690-Ga0116143_1000481221

Arc-Vir

IMGVR_UViG_3300009690_000630-3300009690-Ga0116143_1000481221

Quality

79.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-57
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.76 59.0 4.99e-01 96.4% 51.1%
6tepC02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.72 59.0 4.10e-01 91.1% 95.6%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.71 52.0 4.84e-01 96.4% 62.5%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.71 60.0 4.68e-01 98.2% 71.4%
6lpnA03 3.30.70.2190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 59.0 4.78e-01 98.2% 90.4%
1nrjA00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.69 49.0 3.64e-01 76.8% 32.0%
3klqA01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 54.0 4.26e-01 96.4% 41.2%
5t0oA03 3.30.70.1320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like 0.68 53.0 4.43e-01 87.5% 98.0%
4hslA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 49.0 3.58e-01 80.4% 31.9%
3eqvA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.66 47.0 3.66e-01 76.8% 76.7%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.66 53.0 4.81e-01 91.1% 100.0%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.65 52.0 5.44e-01 98.2% 100.0%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.65 46.0 3.60e-01 78.6% 33.6%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.65 53.0 4.39e-01 94.6% 57.8%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.64 54.0 4.85e-01 98.2% 79.3%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.64 56.0 4.84e-01 100.0% 66.3%
1vdxA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.64 53.0 3.79e-01 98.2% 93.5%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.64 46.0 3.60e-01 78.6% 79.7%
2v0uA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 45.0 3.39e-01 75.0% 45.2%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 51.0 5.01e-01 100.0% 82.3%
6x4tA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 54.0 4.31e-01 96.4% 63.5%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.63 55.0 4.88e-01 100.0% 98.8%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.63 54.0 4.07e-01 96.4% 48.6%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.63 50.0 3.38e-01 91.1% 24.2%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 43.0 3.36e-01 75.0% 30.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.63 52.0 3.78e-01 96.4% 89.8%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 41.0 3.43e-01 75.0% 35.8%
7tzeA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 51.0 4.15e-01 92.9% 62.4%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.62 51.0 4.44e-01 96.4% 90.2%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.62 53.0 4.57e-01 100.0% 100.0%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 48.0 3.94e-01 94.6% 52.8%
4jysB00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.61 49.0 4.00e-01 92.9% 68.4%
1mt1B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.61 51.0 4.20e-01 100.0% 62.5%
1wapA00 2.60.40.50 Mainly Beta › Sandwich › Immunoglobulin-like › TRAP-like 0.60 52.0 4.93e-01 96.4% 83.8%
3x17A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 52.0 4.25e-01 98.2% 52.9%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 42.0 3.44e-01 76.8% 42.4%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 41.0 3.23e-01 75.0% 31.1%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 48.0 4.14e-01 94.6% 84.8%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.60 41.0 3.16e-01 71.4% 29.0%
5eo9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 51.0 4.11e-01 96.4% 55.5%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.60 49.0 4.24e-01 96.4% 89.4%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 42.0 3.52e-01 76.8% 74.3%
6dgiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.59 43.0 3.33e-01 82.1% 74.3%
6bwsB00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.58 44.0 3.36e-01 83.9% 62.0%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 40.0 3.27e-01 75.0% 37.3%
3r5dA01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 46.0 3.77e-01 100.0% 91.5%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.57 45.0 4.44e-01 100.0% 85.7%
6tfjA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 44.0 3.63e-01 96.4% 44.3%
1a76A01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.56 43.0 2.97e-01 83.9% 73.4%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 42.0 2.81e-01 82.1% 55.0%
2z5bA00 3.30.230.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.56 45.0 3.58e-01 92.9% 66.1%
3uxjA01 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.56 47.0 3.73e-01 96.4% 55.9%
3zn4A00 2.60.120.1180 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 3.49e-01 96.4% 50.3%
3gqqA00 2.70.50.40 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit 0.54 45.0 3.25e-01 94.6% 50.9%
3krnA00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.54 43.0 3.09e-01 92.9% 53.0%
4mamB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 43.0 3.15e-01 98.2% 83.0%
3psfA03 1.10.3500.10 Mainly Alpha › Orthogonal Bundle › Tex N-terminal region-like › Tex N-terminal region-like 0.53 44.0 2.80e-01 96.4% 20.2%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.52 39.0 3.15e-01 85.7% 82.1%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3497127 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.74 51.0 3.74e-01 75.0% 28.3%
3184485 76.1.1.0 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.73 64.0 5.14e-01 100.0% 50.9%
3173836 304.4.1.72 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › PF29523 0.73 61.0 5.43e-01 92.9% 100.0%
4948343 304.4.1.82 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3303 0.72 59.0 5.14e-01 92.9% 100.0%
5044631 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 52.0 3.96e-01 76.8% 77.7%
3584610 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.71 54.0 4.00e-01 96.4% 31.3%
3216926 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 64.0 4.56e-01 98.2% 40.7%
4975418 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 49.0 3.88e-01 75.0% 86.7%
3993298 304.163.1.1 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.69 56.0 5.03e-01 91.1% 98.8%
4040528 304.24.1.16 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › PrmA 0.68 57.0 5.03e-01 100.0% 92.2%
3794632 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.68 48.0 3.52e-01 75.0% 35.1%
4978704 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 46.0 3.44e-01 73.2% 84.8%
3987406 3115.6.1.1 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.67 57.0 5.23e-01 100.0% 85.3%
3586980 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 57.0 4.38e-01 98.2% 56.2%
3629469 304.4.1.53 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › R1_ABCA1 0.66 56.0 4.96e-01 100.0% 98.8%
5047502 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 47.0 3.55e-01 76.8% 67.1%
3407363 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.65 46.0 3.43e-01 75.0% 29.7%
3526352 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.65 49.0 3.83e-01 87.5% 96.4%
4997774 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 47.0 3.60e-01 78.6% 74.8%
5049518 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 46.0 3.60e-01 76.8% 76.7%
3273196 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.65 45.0 3.29e-01 73.2% 78.7%
3975813 223.3.1.2 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S11 0.64 46.0 3.22e-01 75.0% 92.9%
3800762 2011.1.1.3 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M17 0.64 54.0 3.54e-01 96.4% 40.0%
4029586 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.64 54.0 3.96e-01 94.6% 49.3%
3821464 5.1.12.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.64 55.0 3.69e-01 96.4% 32.1%
5079671 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 44.0 3.64e-01 75.0% 86.4%
3923606 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.63 52.0 3.95e-01 96.4% 77.2%
3445562 10.32.1.212 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GUB_WAK_bind 0.63 54.0 3.74e-01 94.6% 32.4%
5051015 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 43.0 3.23e-01 76.8% 26.5%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.63 51.0 5.14e-01 89.3% 90.9%
4972028 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 45.0 3.29e-01 76.8% 67.7%
5051386 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 44.0 3.23e-01 75.0% 33.8%
3512390 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.63 51.0 4.57e-01 96.4% 100.0%
3278358 284.3.1.2 a+b two layers › FKBP-like › Colicin E3 immunity protein › Colicin E3 immunity protein › DUF7683 0.63 53.0 4.86e-01 94.6% 98.7%
3892017 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 50.0 3.81e-01 94.6% 100.0%
4977323 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 44.0 3.45e-01 75.0% 37.6%
4929510 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 48.0 5.07e-01 85.7% 98.0%
5046495 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 43.0 3.61e-01 78.6% 41.0%
3736912 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.62 44.0 3.41e-01 75.0% 35.4%
4018561 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.62 43.0 3.28e-01 75.0% 29.0%
4999281 223.2.1.20 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.61 45.0 3.42e-01 78.6% 72.1%
4977897 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 43.0 3.39e-01 76.8% 77.0%
3739712 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.61 43.0 3.34e-01 75.0% 32.3%
4096194 375.1.1.3 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L33 0.61 46.0 4.84e-01 87.5% 95.8%
3743609 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.60 41.0 2.98e-01 73.2% 46.4%
4447297 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.60 43.0 3.20e-01 78.6% 76.5%
3705774 223.2.1.42 a+b three layers › Profilin-like › profilin-like › profilin-like › Synaptobrevin 0.59 49.0 3.39e-01 100.0% 48.0%
3593387 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 40.0 3.19e-01 75.0% 30.6%
4059594 375.1.1.3 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L33 0.59 45.0 4.72e-01 89.3% 95.9%
3996298 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 47.0 4.32e-01 96.4% 98.8%
3991219 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 43.0 3.50e-01 82.1% 80.0%
4052313 2484.1.1.10 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.57 47.0 4.01e-01 100.0% 88.6%
3600531 4012.3.1.0 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.56 45.0 4.58e-01 94.6% 98.1%
3168516 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.56 39.0 2.96e-01 75.0% 30.7%
3892842 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.52 41.0 4.02e-01 94.6% 89.2%
4428924 206.1.3.19 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.52 44.0 2.91e-01 94.6% 42.5%
3300895 375.13.1.3 few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › ubiquitin 0.52 36.0 3.69e-01 78.6% 78.2%
3409951 223.2.1.20 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.51 45.0 3.30e-01 98.2% 61.4%
4558763 223.2.1.20 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.50 45.0 3.38e-01 100.0% 56.3%
3804439 2.1.1.23 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 0.50 35.0 2.70e-01 76.8% 95.3%